Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VEJY3_RS13045 Genome accession   NC_016613
Coordinates   2911424..2912647 (+) Length   407 a.a.
NCBI ID   WP_014232952.1    Uniprot ID   -
Organism   Vibrio sp. EJY3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2906424..2917647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS13025 (VEJY3_13015) ampD 2907463..2908008 (-) 546 WP_014232948.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VEJY3_RS13030 (VEJY3_13020) nadC 2908101..2908988 (+) 888 WP_014232949.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VEJY3_RS13035 (VEJY3_13025) - 2909247..2909708 (+) 462 WP_014232950.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  VEJY3_RS13040 (VEJY3_13030) pilB 2909708..2911393 (+) 1686 WP_014232951.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VEJY3_RS13045 (VEJY3_13035) pilC 2911424..2912647 (+) 1224 WP_014232952.1 type II secretion system F family protein Machinery gene
  VEJY3_RS13050 (VEJY3_13040) pilD 2912715..2913584 (+) 870 WP_014232953.1 A24 family peptidase Machinery gene
  VEJY3_RS13055 (VEJY3_13045) coaE 2913585..2914199 (+) 615 WP_014232954.1 dephospho-CoA kinase -
  VEJY3_RS13060 (VEJY3_13050) zapD 2914226..2914966 (+) 741 WP_014232955.1 cell division protein ZapD -
  VEJY3_RS13065 (VEJY3_13055) yacG 2915040..2915234 (+) 195 WP_014232956.1 DNA gyrase inhibitor YacG -
  VEJY3_RS13070 (VEJY3_13060) rplS 2915611..2915964 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  VEJY3_RS13075 (VEJY3_13065) trmD 2916005..2916766 (-) 762 WP_014232957.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VEJY3_RS13080 (VEJY3_13070) rimM 2916794..2917342 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  VEJY3_RS13085 (VEJY3_13075) rpsP 2917373..2917621 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45065.31 Da        Isoelectric Point: 10.3231

>NTDB_id=43095 VEJY3_RS13045 WP_014232952.1 2911424..2912647(+) (pilC) [Vibrio sp. EJY3]
MKTTTPQLKNFRWKGINSSGKKTSGQTLAMSEVEVRERLSAQHIKIKKLKKSSISFITKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSNNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDALYTDLIATGELSGNLAEVFERLATYREK
SEELRAKVIKALIYPAMVMLVALGVSYLMLTQVIPEFEKMFSGFGAELPWFTRQVLDLSAWMQNWGSFIALGALSLIISA
RILVKRSDSFRLMMDRAILRIPVLGAVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTSGNLHYQLAVEEVYRDTAAG
MPMYVAMRNCDVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=43095 VEJY3_RS13045 WP_014232952.1 2911424..2912647(+) (pilC) [Vibrio sp. EJY3]
ATGAAAACGACGACCCCACAACTAAAGAACTTCCGCTGGAAAGGCATTAATAGCTCAGGAAAAAAAACTTCTGGGCAAAC
GCTGGCCATGAGCGAAGTGGAAGTACGCGAACGACTCAGCGCTCAGCACATAAAAATCAAAAAACTGAAAAAAAGTAGTA
TTTCTTTTATAACCAAACTGAGTCATCGGGTAAAAGGCAAAGACATCACCGTTTTTACTCGTCAAATTTCGACTATGCTG
GTCACTGGTGTCCCACTCGTTCAGGCTTTAAAATTGGTTTCCAATAACCATAAAAAAGCCGAGATGAAGTCTATTTTAAT
GAGCGTAACTCGAGCGGTTGAAGCGGGTACACCGATGTCGAAAGCAATGCGCACGGCCAGCACACATTTTGACGCACTTT
ATACTGACCTCATCGCAACCGGAGAACTGTCAGGCAATCTGGCAGAAGTGTTTGAACGACTGGCCACTTATCGTGAAAAA
AGTGAGGAACTCAGAGCAAAAGTCATCAAGGCCCTGATCTACCCAGCCATGGTTATGTTGGTTGCGCTCGGAGTGTCCTA
TCTCATGCTCACTCAAGTTATCCCCGAGTTTGAAAAAATGTTTTCTGGGTTTGGGGCTGAGTTACCTTGGTTCACCAGAC
AAGTACTAGACTTGTCTGCGTGGATGCAAAATTGGGGTTCATTTATCGCTCTTGGGGCACTTAGCCTAATTATATCAGCA
AGAATACTGGTCAAACGTTCTGATTCTTTTCGCTTGATGATGGATCGAGCCATATTGAGAATTCCCGTTCTTGGCGCTGT
GTTGTCCAAGGCTGCGATTGCTAAATTTAGCCGAACCCTGGCCACCAGCTTCAGTGCTGGTATTCCTATTCTGACCAGTT
TAAAAACCACCTCCAAAACGTCAGGAAATCTGCACTATCAGCTGGCAGTAGAAGAGGTCTATCGTGATACAGCCGCTGGT
ATGCCAATGTATGTCGCGATGCGTAACTGCGATGTTTTCCCTGAATTAGTGCTACAAATGGTGATGATAGGAGAGGAGTC
CGGGCGGCTTGACGATATGCTCAATAAAGTTGCTACGATCTATGAATTCGAAGTAGATAATACCGTCGATAACCTAAGTA
AGATTCTTGAACCGCTGATTATTGTTTTTCTTGGTGTGGTCGTTGGTGGATTAGTGACAGCAATGTACCTGCCAATCTTT
AACTTAATGAGTGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.241

100

0.862
  pilC Vibrio cholerae strain A1552

73.58

99.509

0.732
  pilC Legionella pneumophila strain ERS1305867

40.988

99.509

0.408
  pilC Acinetobacter baylyi ADP1

41.5

98.28

0.408
  pilG Neisseria gonorrhoeae MS11

41.191

99.017

0.408
  pilG Neisseria meningitidis 44/76-A

40.943

99.017

0.405
  pilC Pseudomonas stutzeri DSM 10701

40.399

98.526

0.398
  pilC Acinetobacter baumannii D1279779

40.25

98.28

0.396

Multiple sequence alignment