Detailed information NTG0043096

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VEJY3_RS13050
• Genome accession: NC_016613
• Coordinates: 2912715..2913584 (+)
• Length: 289 a.a.
• NCBI ID: WP_014232953.1
• Uniprot ID: -
• Organism: Vibrio sp. EJY3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2907715..2918584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VEJY3_RS13030 (VEJY3_13020)	nadC	2908101..2908988 (+)	888	WP_014232949.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VEJY3_RS13035 (VEJY3_13025)	-	2909247..2909708 (+)	462	WP_014232950.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
VEJY3_RS13040 (VEJY3_13030)	pilB	2909708..2911393 (+)	1686	WP_014232951.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VEJY3_RS13045 (VEJY3_13035)	pilC	2911424..2912647 (+)	1224	WP_014232952.1	type II secretion system F family protein	Machinery gene
VEJY3_RS13050 (VEJY3_13040)	pilD	2912715..2913584 (+)	870	WP_014232953.1	A24 family peptidase	Machinery gene
VEJY3_RS13055 (VEJY3_13045)	coaE	2913585..2914199 (+)	615	WP_014232954.1	dephospho-CoA kinase	-
VEJY3_RS13060 (VEJY3_13050)	zapD	2914226..2914966 (+)	741	WP_014232955.1	cell division protein ZapD	-
VEJY3_RS13065 (VEJY3_13055)	yacG	2915040..2915234 (+)	195	WP_014232956.1	DNA gyrase inhibitor YacG	-
VEJY3_RS13070 (VEJY3_13060)	rplS	2915611..2915964 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
VEJY3_RS13075 (VEJY3_13065)	trmD	2916005..2916766 (-)	762	WP_014232957.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VEJY3_RS13080 (VEJY3_13070)	rimM	2916794..2917342 (-)	549	WP_014232958.1	ribosome maturation factor RimM	-
VEJY3_RS13085 (VEJY3_13075)	rpsP	2917373..2917621 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32352.42 Da
• Isoelectric Point: 6.4408

>NTDB_id=43096 VEJY3_RS13050 WP_014232953.1 2912715..2913584(+) (pilD) [Vibrio sp. EJY3]
MEVFQYYPWLFVVFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAPISARYPIVEILTAACSGYVAFHFGFSYFTIALIFFTFILITATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA

Nucleotide

• Length: 870 bp

>NTDB_id=43096 VEJY3_RS13050 WP_014232953.1 2912715..2913584(+) (pilD) [Vibrio sp. EJY3]
ATGGAAGTATTTCAGTACTACCCATGGTTATTCGTTGTATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCCCGCTCCTCTTGCCAACAGTGCGGTACTCCGATTCGCATTCGC
GATAACATCCCAGTGATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCCCCGATCAGCGCCAGATACCC
AATTGTAGAAATACTGACGGCAGCCTGCTCCGGCTACGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTAA
TATTCTTTACTTTCATTCTGATCACAGCGACATTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTTAGTCCTGTTAGTCTGCAAGATGCCGTGATTGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAGTTGCTTACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCATGGCTGGGTTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCCATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.194	99.654	0.879
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	53.069	95.848	0.509
pilD	Acinetobacter nosocomialis M2	52.708	95.848	0.505
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443