Detailed information NTG0429777

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: HAP36_RS04385
• Genome accession: NZ_CP050053
• Coordinates: 929246..930466 (-)
• Length: 406 a.a.
• NCBI ID: WP_003112840.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain LIUYANG-C
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 924246..935466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HAP36_RS04340	-	924427..924876 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
HAP36_RS04345	-	924873..925502 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
HAP36_RS04350	-	925635..926060 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
HAP36_RS04355	-	926057..926527 (+)	471	WP_003103866.1	hypothetical protein	-
HAP36_RS04360	-	926524..927213 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
HAP36_RS04365	-	927319..927528 (+)	210	WP_003094660.1	hypothetical protein	-
HAP36_RS04370	yacG	927565..927765 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
HAP36_RS04375	coaE	927762..928373 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
HAP36_RS04380	pilD	928370..929242 (-)	873	WP_003112839.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
HAP36_RS04385	pilC	929246..930466 (-)	1221	WP_003112840.1	type 4a pilus biogenesis protein PilC	Machinery gene
HAP36_RS04390	pilB	930470..932170 (-)	1701	WP_003112841.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HAP36_RS04395	pilA	932402..932851 (+)	450	WP_003112842.1	type 4a pilus biogenesis protein PilA	Machinery gene
HAP36_RS04405	nadC	933053..933901 (-)	849	WP_003104915.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44318.06 Da
• Isoelectric Point: 9.8784

>NTDB_id=429777 HAP36_RS04385 WP_003112840.1 929246..930466(-) (pilC) [Pseudomonas aeruginosa strain LIUYANG-C]
MADKALKTSVFIWEGTDKKGAKVKGELTGQNPMLVKAHLRKQGINPLKVRKKGISLLGAGKKVKPMDIALFTRQMATMMG
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVSSGNSLANSLRKKPQYFDELYCNLVDAGEQSGALENLLDRVATYKEKT
ESLKAKIRKAMTYPIAVIIVALIVSAILLIKVVPQFQSVFQGFGAELPAFTQMVVNLSEFLQEWWLAVIVGVGAIGFTFK
ELHKRSKKFRDTLDRTILKLPIFGGIVYKSAVARYARTLSTTFAAGVPLVDALDSVSGATGNIVFKNAVSKIKQDVSTGM
QLNFSMRTTSVFPNMAIQMTAIGEESGSLDEMLSKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIVAMYLPIFQ
LGNVVG

Nucleotide

• Length: 1221 bp

>NTDB_id=429777 HAP36_RS04385 WP_003112840.1 929246..930466(-) (pilC) [Pseudomonas aeruginosa strain LIUYANG-C]
ATGGCGGACAAAGCGTTAAAAACCAGCGTTTTCATCTGGGAGGGCACCGACAAGAAAGGCGCCAAGGTCAAGGGCGAACT
GACCGGGCAGAATCCCATGCTGGTGAAGGCCCATCTGCGCAAGCAAGGCATCAATCCGCTCAAGGTACGCAAGAAAGGTA
TCTCCCTGCTGGGCGCAGGCAAGAAAGTGAAACCCATGGACATCGCCCTGTTCACCCGGCAGATGGCGACCATGATGGGC
GCTGGCGTTCCCCTCCTGCAATCGTTCGACATCATCGGCGAAGGCTTCGACAATCCCAACATGCGCAAGTTGGTGGATGA
GATCAAGCAGGAAGTGTCCTCGGGCAACAGCCTGGCCAACTCACTGAGAAAGAAACCACAGTACTTCGACGAACTCTATT
GCAACCTGGTCGATGCCGGCGAGCAATCGGGCGCCTTGGAAAACTTGCTGGATAGAGTCGCGACCTACAAGGAAAAAACG
GAATCGTTAAAAGCAAAGATCAGGAAGGCGATGACTTATCCTATCGCCGTCATCATCGTTGCCTTGATCGTCTCCGCCAT
TCTTCTGATCAAGGTCGTTCCGCAGTTCCAATCCGTATTCCAAGGTTTTGGCGCAGAGCTGCCTGCATTCACTCAAATGG
TCGTAAATTTATCCGAGTTCCTACAGGAGTGGTGGCTTGCCGTCATCGTTGGTGTGGGGGCGATTGGCTTTACCTTCAAG
GAACTGCATAAACGCTCGAAAAAATTCCGCGACACACTCGACAGAACGATCCTCAAACTTCCCATTTTCGGAGGCATCGT
CTACAAATCTGCGGTCGCCCGTTATGCACGGACCTTGTCCACGACCTTCGCCGCGGGTGTTCCCCTGGTCGATGCGCTCG
ACTCCGTCTCCGGAGCGACCGGCAATATCGTGTTCAAGAACGCGGTCAGCAAGATCAAGCAAGACGTTTCCACCGGCATG
CAGCTCAACTTCTCCATGCGCACCACCAGCGTCTTTCCCAACATGGCGATCCAGATGACCGCCATCGGCGAGGAGTCCGG
TTCGCTCGATGAGATGCTGAGCAAAGTCGCCAGCTACTACGAAGAGGAAGTCGACAACGCCGTGGACAACCTCACCACGC
TCATGGAACCGATGATCATGGCCGTTCTCGGCGTACTGGTTGGCGGTCTGATCGTGGCCATGTACCTTCCGATCTTCCAA
CTCGGCAACGTCGTCGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	77.037	99.754	0.768
pilC	Acinetobacter baumannii D1279779	60.891	99.507	0.606
pilC	Acinetobacter baylyi ADP1	60.591	100	0.606
pilC	Legionella pneumophila strain ERS1305867	54.545	97.537	0.532
pilG	Neisseria meningitidis 44/76-A	45.658	99.261	0.453
pilG	Neisseria gonorrhoeae MS11	45.409	99.261	0.451
pilC	Vibrio cholerae strain A1552	42.611	100	0.426
pilC	Vibrio campbellii strain DS40M4	41.562	97.783	0.406
pilC	Thermus thermophilus HB27	37.157	98.768	0.367