Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GTCCBUS3UF5_RS06895 Genome accession   NC_016593
Coordinates   1376935..1378179 (+) Length   414 a.a.
NCBI ID   WP_011230794.1    Uniprot ID   S4NH19
Organism   Geobacillus thermoleovorans CCB_US3_UF5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1371935..1383179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTCCBUS3UF5_RS06865 (GTCCBUS3UF5_14830) yfmH 1372034..1373323 (+) 1290 WP_011230788.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GTCCBUS3UF5_RS06870 (GTCCBUS3UF5_14840) ymfI 1373378..1374094 (+) 717 WP_021322287.1 elongation factor P 5-aminopentanone reductase -
  GTCCBUS3UF5_RS06875 (GTCCBUS3UF5_14850) - 1374157..1374405 (+) 249 WP_011230790.1 DUF3243 domain-containing protein -
  GTCCBUS3UF5_RS06880 (GTCCBUS3UF5_14860) - 1374537..1375328 (+) 792 WP_011230791.1 DUF3388 domain-containing protein -
  GTCCBUS3UF5_RS06885 (GTCCBUS3UF5_14870) - 1375355..1376248 (+) 894 WP_011230792.1 helix-turn-helix domain-containing protein -
  GTCCBUS3UF5_RS06890 (GTCCBUS3UF5_14880) pgsA 1376329..1376907 (+) 579 WP_011230793.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GTCCBUS3UF5_RS06895 (GTCCBUS3UF5_14890) cinA 1376935..1378179 (+) 1245 WP_011230794.1 competence/damage-inducible protein A Machinery gene
  GTCCBUS3UF5_RS06900 (GTCCBUS3UF5_14900) - 1378358..1378645 (+) 288 Protein_1344 DNA recombination/repair protein RecA -
  GTCCBUS3UF5_RS06905 (GTCCBUS3UF5_14910) ltrA 1379482..1381296 (+) 1815 WP_020278219.1 group II intron reverse transcriptase/maturase -
  GTCCBUS3UF5_RS06910 (GTCCBUS3UF5_14920) recA 1381369..1382184 (+) 816 WP_021322290.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44870.69 Da        Isoelectric Point: 6.0113

>NTDB_id=42883 GTCCBUS3UF5_RS06895 WP_011230794.1 1376935..1378179(+) (cinA) [Geobacillus thermoleovorans CCB_US3_UF5]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAMLGINVYFHTVVGDNAGRLEQAVKTAQTRANLIIFTGGLGPTKDDLTKET
IARLLGRRLVIDEEALRAIEVYFARTNRPMTENNKKQALVLEGSTVLKNEHGMAPGMALVADGITYMLLPGPPKEMRPMF
KKYGNAFLRRTFSLSERIESRVLRFFGIGESALETAIADLIDAQSNPTIAPLAGDGEVTLRLTAKHQDEAEAKRLLDEVE
SAILARVGRHCYGYNDETLFTKTLERLKERGWTIASAESLTGGLFLEQLTALPGASQVVQGGVVCYTNGVKEQVLGIPRP
LLEAEGAVSEPCARLLAENVRAMCDADIGISFTGVAGPDPLEGHPPGTVYIGIAVRGRDATVHRLMLSGTRDAIRIRTAK
YGCFFLLEMLAADC

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=42883 GTCCBUS3UF5_RS06895 WP_011230794.1 1376935..1378179(+) (cinA) [Geobacillus thermoleovorans CCB_US3_UF5]
TTGAACGCGGAGATCATTGCCGTTGGCTCTGAGCTGTTGCTTGGGCAAATCGCCAATACGAACGCCCAGTTTTTGTCGCA
GCAGCTGGCGATGCTTGGCATTAACGTCTATTTCCATACCGTCGTCGGCGACAACGCCGGCCGCCTTGAGCAGGCGGTGA
AAACGGCGCAAACGAGAGCGAACCTCATCATTTTCACCGGCGGCCTCGGCCCGACGAAAGACGATTTGACGAAGGAGACG
ATCGCCCGTTTGCTTGGCCGCCGGCTCGTGATCGACGAGGAAGCGCTCCGAGCGATTGAGGTGTATTTTGCCCGCACAAA
CCGGCCGATGACAGAAAACAATAAAAAGCAGGCGCTCGTCTTGGAAGGATCGACGGTGCTGAAAAACGAGCACGGCATGG
CGCCAGGGATGGCGCTTGTGGCAGACGGCATTACGTACATGCTGCTGCCCGGGCCGCCGAAAGAAATGCGGCCGATGTTC
AAAAAATACGGAAACGCCTTTTTGCGCCGTACGTTTTCGCTTTCCGAGCGCATCGAGTCGCGCGTGCTCCGCTTTTTTGG
CATCGGTGAATCAGCGCTCGAGACGGCGATTGCGGATTTGATCGACGCCCAGTCGAATCCGACGATCGCGCCGCTGGCCG
GCGACGGTGAAGTGACGCTTCGTCTGACAGCGAAGCATCAGGATGAGGCGGAGGCGAAGCGGCTTCTTGACGAAGTGGAA
TCGGCCATTTTGGCGCGTGTCGGCCGCCACTGCTACGGATATAACGATGAAACGTTGTTTACAAAGACGCTCGAGCGGTT
AAAAGAAAGAGGATGGACGATCGCGTCGGCCGAAAGTTTGACCGGCGGCCTTTTCCTCGAACAGCTCACCGCCCTCCCCG
GCGCGTCGCAAGTCGTGCAGGGCGGTGTCGTCTGCTACACAAACGGCGTCAAAGAACAGGTGCTTGGCATACCGCGCCCG
CTGCTTGAGGCAGAAGGGGCGGTGAGCGAGCCGTGCGCCCGTTTGCTTGCTGAAAACGTCCGCGCGATGTGCGATGCGGA
TATCGGCATCAGCTTCACCGGCGTCGCCGGACCCGATCCGCTTGAGGGCCACCCGCCCGGCACCGTGTATATCGGCATCG
CCGTCCGCGGGCGCGATGCGACTGTCCACCGTCTGATGCTGTCCGGCACGCGTGATGCCATTCGCATCCGCACCGCCAAA
TACGGCTGTTTTTTTCTGCTTGAGATGCTCGCGGCCGACTGCTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S4NH19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.658

98.792

0.589
  cinA Streptococcus mitis SK321

50.914

92.512

0.471
  cinA Streptococcus mitis NCTC 12261

50.914

92.512

0.471
  cinA Streptococcus pneumoniae TIGR4

50.392

92.512

0.466
  cinA Streptococcus pneumoniae Rx1

50.392

92.512

0.466
  cinA Streptococcus pneumoniae R6

50.392

92.512

0.466
  cinA Streptococcus pneumoniae D39

50.131

92.512

0.464
  cinA Streptococcus mutans UA159

47.87

96.377

0.461
  cinA Streptococcus suis isolate S10

42.593

91.304

0.389

Multiple sequence alignment