Detailed information NTG0428456

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: G7Y90_RS04065
• Genome accession: NZ_CP049902
• Coordinates: 804924..806147 (-)
• Length: 407 a.a.
• NCBI ID: WP_045443014.1
• Uniprot ID: -
• Organism: Psychrobacter sp. WY6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 799924..811147

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G7Y90_RS04045	-	801904..802239 (+)	336	WP_045443006.1	pyrimidine/purine nucleoside phosphorylase	-
G7Y90_RS04050	rlmB	802452..803222 (+)	771	WP_238034343.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
G7Y90_RS04055	coaE	803185..803871 (-)	687	WP_055123701.1	dephospho-CoA kinase	-
G7Y90_RS04060	pilD	803996..804898 (-)	903	WP_250163468.1	A24 family peptidase	Machinery gene
G7Y90_RS04065	pilC	804924..806147 (-)	1224	WP_045443014.1	type II secretion system F family protein	Machinery gene
G7Y90_RS04070	pilB	806540..808247 (-)	1708	Protein_796	type IV-A pilus assembly ATPase PilB	-
G7Y90_RS04075	-	808887..809078 (+)	192	WP_250163469.1	hypothetical protein	-
G7Y90_RS04080	tpiA	809093..809701 (+)	609	WP_250163470.1	triose-phosphate isomerase	-
G7Y90_RS04085	secG	809916..810224 (+)	309	WP_025652589.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 407 a.a.
• Molecular weight: 44714.66 Da
• Isoelectric Point: 9.7724

>NTDB_id=428456 G7Y90_RS04065 WP_045443014.1 804924..806147(-) (pilC) [Psychrobacter sp. WY6]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGISVKGIKKKPKPLYTFKKSIKPIDIAIFSRQMATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKSDIEAGGTFASALRKHPRYFDDLFCSLIDSGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVIVVAIIVTIILLIKVVPVFSGLFESFGAELPAFTQMVVNMSEWMQAWWFILIIIIGGTIIGF
SETKKRSKKFRDFLDRAVLKAPIFGNIAYQAIIARFARTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQQIKNDVSTG
QQLQFSIRSTNLFPSLAIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPLIMAVLGVLIGGLVIAMYLPIF
QMGAVVG

Nucleotide

• Length: 1224 bp

>NTDB_id=428456 G7Y90_RS04065 WP_045443014.1 804924..806147(-) (pilC) [Psychrobacter sp. WY6]
ATGGCAAAAGCGAAGACCGACATGCTGTTAGACTTTGTCTATGATGGGGTGAATCGACGCGGACAAAAAGTAAAAGGGGA
GACTACCAGCCGTAGTTTAGAGTTGGCAAAAGCGACTTTACGCAAACAAGGTATCAGTGTCAAAGGTATTAAGAAAAAAC
CGAAGCCGCTTTATACTTTCAAGAAATCCATCAAACCTATTGATATTGCTATTTTTTCTCGGCAAATGGCGACCATGATG
AAAGCGGGCGTGCCATTGACCCAATCCTTTGAGATTGTTGCTGACTCACTTGATAATCCCAGTATGAAAGATCTGGTATT
ACAAATAAAATCGGACATTGAAGCGGGTGGGACTTTTGCTTCAGCATTACGCAAGCACCCACGTTATTTTGACGATCTGT
TTTGTTCACTCATCGATTCTGGTGAGCAGTCAGGTGCACTGGAAACCATGCTTGAACGCGTTGCTACCTATAAAGAAAAA
AGTGAGTTGCTTAAAGCCAAAATTAAGAAAGCAATGAAGTACCCTATCGCGGTTATCGTTGTTGCTATTATTGTGACTAT
CATCCTGCTAATTAAAGTAGTACCTGTATTTTCTGGTCTATTTGAATCTTTTGGTGCAGAGCTGCCTGCTTTTACCCAAA
TGGTTGTCAATATGTCTGAGTGGATGCAGGCGTGGTGGTTTATTTTAATTATCATTATCGGCGGTACTATCATTGGCTTT
TCAGAGACGAAAAAACGCTCTAAGAAATTCCGTGACTTCTTAGACCGTGCGGTTTTAAAAGCACCAATATTTGGCAATAT
TGCCTATCAAGCGATTATCGCGCGTTTTGCTCGTACACTATCGACGACCTTTGCTGCGGGCGTGCCACTTATTGATGCCC
TCGACTCTACAGCTGGTGCCACTAATAATGTTGTATTTTATAATGCCACTCAGCAAATCAAAAATGATGTTTCTACTGGT
CAACAATTACAGTTTTCAATACGCTCGACCAACCTTTTCCCAAGCTTAGCCATTCAAATGGTTGGCATTGGTGAAGAATC
CGGTAGTTTGGAAGAGATGTTAGACAAAGTTGCCGTCTACTATGAAAATGAAGTAGATAACGCTGTTGATGGATTGACCA
GCTTGATGGAACCTTTGATTATGGCAGTCTTAGGCGTATTGATCGGTGGCTTGGTGATTGCCATGTATTTACCGATTTTC
CAGATGGGCGCAGTAGTAGGCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (72-195)

• Type II secretion system (T2SS), protein F (T2SSF) (276-398)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baumannii D1279779	69.608	100	0.698
pilC	Acinetobacter baylyi ADP1	68.627	100	0.688
pilC	Pseudomonas stutzeri DSM 10701	63.797	97.052	0.619
pilC	Legionella pneumophila strain ERS1305867	56.14	98.034	0.55
pilC	Vibrio cholerae strain A1552	42.157	100	0.423
pilG	Neisseria gonorrhoeae MS11	43.434	97.297	0.423
pilG	Neisseria meningitidis 44/76-A	43.182	97.297	0.42
pilC	Vibrio campbellii strain DS40M4	41.235	99.509	0.41