Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   G7Y90_RS04060 Genome accession   NZ_CP049902
Coordinates   803996..804898 (-) Length   300 a.a.
NCBI ID   WP_250163468.1    Uniprot ID   -
Organism   Psychrobacter sp. WY6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 798996..809898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7Y90_RS04040 recN 799493..801172 (-) 1680 WP_250163467.1 DNA repair protein RecN -
  G7Y90_RS04045 - 801904..802239 (+) 336 WP_045443006.1 pyrimidine/purine nucleoside phosphorylase -
  G7Y90_RS04050 rlmB 802452..803222 (+) 771 WP_238034343.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G7Y90_RS04055 coaE 803185..803871 (-) 687 WP_055123701.1 dephospho-CoA kinase -
  G7Y90_RS04060 pilD 803996..804898 (-) 903 WP_250163468.1 A24 family peptidase Machinery gene
  G7Y90_RS04065 pilC 804924..806147 (-) 1224 WP_045443014.1 type II secretion system F family protein Machinery gene
  G7Y90_RS04070 pilB 806540..808247 (-) 1708 Protein_796 type IV-A pilus assembly ATPase PilB -
  G7Y90_RS04075 - 808887..809078 (+) 192 WP_250163469.1 hypothetical protein -
  G7Y90_RS04080 tpiA 809093..809701 (+) 609 WP_250163470.1 triose-phosphate isomerase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33173.77 Da        Isoelectric Point: 8.2281

>NTDB_id=428455 G7Y90_RS04060 WP_250163468.1 803996..804898(-) (pilD) [Psychrobacter sp. WY6]
MQFIELLQDNMPIALGIFGLLGLCVGSFLNVVIHRIPLMMVYSWRQECSQFMSEQADMPREHTLPLTNIVAADQPITLSR
PASRCPHCAHKIKWYENIPLISWLILRGRCSECKAAIGLRYPLVELATALLSMLVIYQFGVTAAGLSALILVWTLVALTG
IDFDTQLLPDRLTFPLAGLGLAVNSQGWFVSPTQSIWGLLLGFLSLWIVVKIFYLLTKKHGMGQGDFKLLAVLGAWLGPM
MLPLIILLSSLLGSIVGIILMKKQGESKPFAFGPYIAIAGIVALLYGSDIVNWYLGMYTY

Nucleotide


Download         Length: 903 bp        

>NTDB_id=428455 G7Y90_RS04060 WP_250163468.1 803996..804898(-) (pilD) [Psychrobacter sp. WY6]
ATGCAATTTATAGAGTTATTACAAGATAATATGCCTATCGCTTTAGGCATATTTGGCCTATTAGGTCTTTGTGTTGGCAG
TTTTTTAAATGTGGTGATTCACCGTATTCCGCTGATGATGGTTTATAGCTGGCGACAAGAGTGCAGCCAGTTTATGTCAG
AACAAGCAGACATGCCTCGAGAACACACTCTGCCCCTAACAAATATCGTAGCGGCTGACCAGCCGATTACTTTGAGTCGA
CCAGCCTCACGCTGCCCTCATTGCGCCCACAAAATAAAGTGGTACGAAAACATACCGTTAATTAGCTGGTTAATACTACG
TGGCCGTTGCTCAGAATGTAAAGCTGCGATTGGACTGCGTTATCCACTGGTTGAGCTAGCAACAGCCCTACTATCAATGT
TAGTGATTTATCAGTTTGGCGTAACTGCAGCTGGCTTGTCAGCCCTGATTTTGGTATGGACGCTGGTCGCCTTAACCGGT
ATTGATTTTGATACCCAATTACTGCCCGATCGCTTGACCTTTCCATTAGCGGGTTTAGGATTAGCAGTGAATTCACAAGG
TTGGTTTGTCTCACCTACCCAGTCAATTTGGGGCTTATTGCTAGGATTTTTGTCATTGTGGATAGTGGTTAAGATATTTT
ATCTACTCACTAAAAAGCATGGTATGGGGCAAGGAGATTTCAAATTATTGGCAGTATTAGGTGCTTGGCTTGGACCCATG
ATGTTGCCATTGATTATTTTATTGTCTTCTCTATTAGGCTCAATCGTTGGGATTATTTTGATGAAGAAACAGGGTGAAAG
CAAGCCGTTTGCCTTTGGTCCTTATATCGCTATCGCTGGTATTGTTGCTTTATTATATGGCTCAGATATCGTCAACTGGT
ATCTCGGCATGTATACTTACTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(149-258)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

56.272

93

0.523
  pilD Acinetobacter baumannii D1279779

55.556

93

0.517
  pilD Vibrio cholerae strain A1552

49.104

93

0.457
  pilD Vibrio campbellii strain DS40M4

48.399

93.667

0.453
  pilD Neisseria gonorrhoeae MS11

42.708

96

0.41