Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   G8E00_RS01585 Genome accession   NZ_CP049801
Coordinates   342523..344688 (+) Length   721 a.a.
NCBI ID   WP_166221539.1    Uniprot ID   A0A6G8RS59
Organism   Acinetobacter shaoyimingii strain 323-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337523..349688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E00_RS01565 (G8E00_01565) comM 339554..340612 (+) 1059 WP_166008720.1 pilus assembly protein PilM Machinery gene
  G8E00_RS01570 (G8E00_01570) pilN 340612..341250 (+) 639 WP_166221533.1 PilN domain-containing protein Machinery gene
  G8E00_RS01575 (G8E00_01575) pilO 341247..341975 (+) 729 WP_166221535.1 type 4a pilus biogenesis protein PilO Machinery gene
  G8E00_RS01580 (G8E00_01580) comL 341975..342502 (+) 528 WP_166221537.1 pilus assembly protein PilP Machinery gene
  G8E00_RS01585 (G8E00_01585) pilQ 342523..344688 (+) 2166 WP_166221539.1 type IV pilus secretin PilQ Machinery gene
  G8E00_RS01590 (G8E00_01590) aroK 344725..345267 (+) 543 WP_166221541.1 shikimate kinase AroK -
  G8E00_RS01595 (G8E00_01595) aroB 345342..346424 (+) 1083 WP_166221543.1 3-dehydroquinate synthase -
  G8E00_RS01600 (G8E00_01600) - 346437..347264 (+) 828 WP_166008713.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78979.78 Da        Isoelectric Point: 5.7372

>NTDB_id=427900 G8E00_RS01585 WP_166221539.1 342523..344688(+) (pilQ) [Acinetobacter shaoyimingii strain 323-1]
MKNSFNFFWGGDRPMINNTLRQFSMATVAIAVMQTAVAQVTMTDVLPMQVAGQGTEIRVMFDGIPPQPKAYQLSNPSKLI
LDFEQAKQKVAKKSIPVATDEATSVDVSSDDQRSRLTVNLKKSGNYTTRIEGNTFILKVNNDAKTIVPVTNPIQAPIKQQ
QGLADIGFQRGSNGEGQVVLRLLNINTPVDVQQQGSKVVVRFLGNKIPAHLIRRLNVNDFATPVSTVDAYNEGSNGIVTI
QSTGNYEYMAFQAEDKLTLSLKRPEETQNTRNISAPNRYTGNKISLDFQDIEVRRVLQLLADFTGINMVTPDSVQGNITL
RLKDVPWDQALDIILKTKNLDKRRNGNVIWIAPVSELAKAEDEEAKALAQSIKLAPIQTEYIKLSYAKAEDIFKIIQDSR
DQKASTSNRTTGGESLALEGLLSARGSMVADPRTNTLIINDTAQNIDKIRKMTDLLDVSIKQVMIEARIVRATTDFTKEM
GVKWGVTGITANNKLVIGGSEDTVWDIRDPDDEGRVTITRPNNLNVDLGITDAAGKIAFGLINMSNFMLDLELSALQSDG
YGEVISTPKVLTADKQNAKVASGTQIPYQSSEGTGAGAVAKTEFVDATLSLDVTPSITPDNKILMQLNITSDSPGQATPT
GQITINKNEIVTNVLVDNGETVVLGGIFEQETRNTVTKVPFLGDLPYIGHLFRKDAKSDAKRELLIFVTPRIVNDSQTRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=427900 G8E00_RS01585 WP_166221539.1 342523..344688(+) (pilQ) [Acinetobacter shaoyimingii strain 323-1]
ATGAAGAACAGTTTTAATTTTTTTTGGGGTGGGGATAGACCGATGATAAATAACACTCTTCGTCAGTTTTCAATGGCAAC
GGTTGCTATTGCTGTAATGCAGACGGCAGTTGCTCAAGTCACGATGACGGACGTTTTGCCCATGCAAGTTGCTGGCCAGG
GCACTGAAATCCGCGTCATGTTCGATGGTATTCCACCTCAGCCAAAAGCTTATCAGTTGTCAAATCCAAGTAAACTCATT
CTTGACTTTGAGCAAGCCAAACAAAAAGTTGCCAAAAAATCCATTCCAGTAGCAACGGATGAAGCGACATCTGTGGACGT
ATCATCAGATGATCAACGTTCAAGATTGACCGTAAATTTAAAAAAATCAGGCAATTATACGACCCGTATAGAGGGCAATA
CGTTTATTTTAAAAGTTAATAATGATGCTAAAACTATCGTGCCTGTTACAAATCCTATTCAGGCGCCAATTAAGCAGCAA
CAAGGGCTTGCAGATATTGGATTTCAGCGCGGTAGTAATGGTGAAGGCCAAGTTGTCTTACGATTGTTAAATATCAATAC
GCCAGTCGATGTACAGCAACAGGGGAGTAAGGTTGTTGTTCGCTTCTTAGGAAATAAGATACCTGCGCATTTGATTCGTC
GACTCAATGTGAATGATTTCGCAACACCAGTTTCGACTGTTGACGCTTATAATGAAGGTTCCAATGGTATTGTAACAATC
CAATCAACGGGGAATTATGAATACATGGCATTTCAGGCTGAAGATAAACTCACTTTAAGTTTAAAACGACCTGAAGAAAC
TCAAAATACGCGAAATATATCTGCACCGAATCGCTATACAGGCAATAAAATCTCTTTAGATTTCCAAGATATTGAAGTGC
GTCGTGTTTTACAGCTGCTCGCAGATTTTACGGGCATCAATATGGTTACACCTGATTCAGTACAAGGCAATATTACCTTG
CGTTTGAAAGATGTGCCTTGGGATCAAGCACTCGATATTATCTTAAAGACCAAAAATTTGGATAAACGTCGTAATGGAAA
TGTCATTTGGATCGCGCCAGTTTCAGAACTTGCTAAAGCAGAAGATGAAGAAGCAAAAGCACTTGCACAAAGTATTAAAC
TTGCGCCGATTCAGACTGAATATATTAAACTCAGTTATGCGAAAGCTGAAGATATTTTCAAAATCATTCAAGATTCAAGA
GATCAAAAAGCCTCAACTTCGAATCGTACCACGGGTGGAGAATCACTGGCTTTAGAGGGGCTGCTTAGTGCACGAGGGAG
TATGGTTGCCGATCCTCGAACCAACACCTTGATTATCAATGACACAGCACAAAATATTGATAAAATTCGAAAAATGACTG
ACTTGTTGGATGTATCTATTAAACAGGTCATGATTGAAGCACGTATTGTTCGTGCAACGACAGATTTCACCAAAGAAATG
GGTGTGAAATGGGGTGTTACAGGTATTACAGCGAATAACAAGTTGGTTATTGGCGGAAGTGAAGATACGGTATGGGATAT
AAGAGATCCTGATGATGAGGGAAGAGTAACTATTACTCGGCCAAATAACTTGAACGTTGATTTAGGTATTACAGATGCGG
CAGGTAAAATCGCTTTTGGTTTAATCAATATGTCAAACTTTATGCTTGATTTAGAGTTGTCGGCATTACAATCTGATGGC
TATGGTGAGGTAATTTCTACACCAAAAGTTTTAACTGCAGACAAACAAAATGCGAAAGTTGCGTCTGGTACACAAATTCC
TTATCAGTCTTCTGAAGGTACTGGAGCAGGTGCTGTAGCTAAAACAGAATTTGTTGATGCAACTTTAAGTTTAGATGTCA
CTCCAAGTATCACTCCAGACAATAAGATTCTGATGCAGTTGAATATTACTAGTGATTCCCCTGGACAAGCGACGCCAACG
GGTCAAATTACCATTAATAAAAATGAAATCGTCACGAATGTATTGGTTGATAATGGTGAAACTGTTGTATTGGGGGGGAT
TTTTGAGCAAGAAACTCGAAATACAGTAACCAAAGTGCCATTCTTAGGAGACTTACCATATATCGGTCATCTGTTCCGTA
AAGATGCAAAATCTGATGCGAAACGTGAGTTATTAATCTTCGTGACACCGAGAATTGTTAATGACAGTCAAACTAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(310-353)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Bacterial type II/III secretion system short domain (Secretin_N)

(380-462)

AMIN domain (AMIN)

(55-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8RS59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

67.08

100

0.675
  pilQ Acinetobacter baumannii strain A118

67.08

100

0.675
  comQ Acinetobacter baylyi ADP1

67.511

98.613

0.666
  pilQ Pseudomonas aeruginosa PAK

39.781

100

0.402