Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   G8E00_RS01580 Genome accession   NZ_CP049801
Coordinates   341975..342502 (+) Length   175 a.a.
NCBI ID   WP_166221537.1    Uniprot ID   A0A6G8RSE6
Organism   Acinetobacter shaoyimingii strain 323-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336975..347502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E00_RS01565 (G8E00_01565) comM 339554..340612 (+) 1059 WP_166008720.1 pilus assembly protein PilM Machinery gene
  G8E00_RS01570 (G8E00_01570) pilN 340612..341250 (+) 639 WP_166221533.1 PilN domain-containing protein Machinery gene
  G8E00_RS01575 (G8E00_01575) pilO 341247..341975 (+) 729 WP_166221535.1 type 4a pilus biogenesis protein PilO Machinery gene
  G8E00_RS01580 (G8E00_01580) comL 341975..342502 (+) 528 WP_166221537.1 pilus assembly protein PilP Machinery gene
  G8E00_RS01585 (G8E00_01585) pilQ 342523..344688 (+) 2166 WP_166221539.1 type IV pilus secretin PilQ Machinery gene
  G8E00_RS01590 (G8E00_01590) aroK 344725..345267 (+) 543 WP_166221541.1 shikimate kinase AroK -
  G8E00_RS01595 (G8E00_01595) aroB 345342..346424 (+) 1083 WP_166221543.1 3-dehydroquinate synthase -
  G8E00_RS01600 (G8E00_01600) - 346437..347264 (+) 828 WP_166008713.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19314.44 Da        Isoelectric Point: 9.4906

>NTDB_id=427899 G8E00_RS01580 WP_166221537.1 341975..342502(+) (comL) [Acinetobacter shaoyimingii strain 323-1]
MKKLKYMIGAVVGISLVGCSSQIDVVNQEMARIRSEPTQKIKPAPEFPPVPTFAYSAQQLRNPFYPSSLANELKVLSGKK
VYPNLSREPQPLEGYALETLYFKGSMKGKSGAIIGLIQTPDREIERVQVGSYLGLNQGRIININPTRIDLLEIVPDGSDG
YIERPRSLVLLGPID

Nucleotide


Download         Length: 528 bp        

>NTDB_id=427899 G8E00_RS01580 WP_166221537.1 341975..342502(+) (comL) [Acinetobacter shaoyimingii strain 323-1]
ATGAAAAAATTAAAATATATGATCGGGGCTGTAGTGGGTATCAGTCTAGTTGGGTGTAGTTCACAAATCGATGTGGTGAA
CCAGGAAATGGCAAGAATTAGGAGTGAACCTACTCAAAAAATTAAACCAGCGCCAGAATTTCCACCAGTACCAACTTTTG
CATATTCTGCTCAGCAATTAAGGAATCCTTTCTACCCAAGTTCATTGGCCAATGAGCTAAAAGTGTTGTCTGGGAAAAAA
GTTTATCCAAATCTTTCTCGAGAACCGCAACCGCTCGAGGGATACGCTCTAGAAACTTTATACTTTAAAGGCAGTATGAA
GGGCAAAAGTGGGGCGATCATTGGGCTCATTCAAACGCCAGATCGTGAGATTGAGCGTGTTCAAGTGGGGAGTTATCTAG
GGCTGAATCAGGGTAGAATTATAAATATAAATCCGACACGAATTGATCTATTGGAAATTGTTCCTGATGGCAGTGATGGC
TATATCGAAAGACCACGCAGTTTGGTTTTACTCGGCCCTATAGATTGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8RSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Acinetobacter baylyi ADP1

66.272

96.571

0.64
  pilP Acinetobacter baumannii D1279779

64.286

96

0.617