Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   G8E00_RS01570 Genome accession   NZ_CP049801
Coordinates   340612..341250 (+) Length   212 a.a.
NCBI ID   WP_166221533.1    Uniprot ID   A0A6G8RSH4
Organism   Acinetobacter shaoyimingii strain 323-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335612..346250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E00_RS01555 (G8E00_01555) - 335995..336807 (+) 813 WP_166008722.1 putative RNA methyltransferase -
  G8E00_RS01560 (G8E00_01560) ponA 336860..339394 (-) 2535 WP_166008721.1 penicillin-binding protein PBP1a -
  G8E00_RS01565 (G8E00_01565) comM 339554..340612 (+) 1059 WP_166008720.1 pilus assembly protein PilM Machinery gene
  G8E00_RS01570 (G8E00_01570) pilN 340612..341250 (+) 639 WP_166221533.1 PilN domain-containing protein Machinery gene
  G8E00_RS01575 (G8E00_01575) pilO 341247..341975 (+) 729 WP_166221535.1 type 4a pilus biogenesis protein PilO Machinery gene
  G8E00_RS01580 (G8E00_01580) comL 341975..342502 (+) 528 WP_166221537.1 pilus assembly protein PilP Machinery gene
  G8E00_RS01585 (G8E00_01585) pilQ 342523..344688 (+) 2166 WP_166221539.1 type IV pilus secretin PilQ Machinery gene
  G8E00_RS01590 (G8E00_01590) aroK 344725..345267 (+) 543 WP_166221541.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24250.74 Da        Isoelectric Point: 5.4844

>NTDB_id=427897 G8E00_RS01570 WP_166221533.1 340612..341250(+) (pilN) [Acinetobacter shaoyimingii strain 323-1]
MAKINLLPWREERREERKKQFILFCVLSAVLAAVMVLATWFFLNQKLNDHEQANQLVSSTNQTLDEQLKTLDGLEEQRQA
VIDRMKLIQGLEGQRPVTVRLIDELVRVMPANAYVTKFTRLGDKFTIEGRAESPNTVAELLRNLEASEWYRNAFMNSFLA
VEEKKEAPQSSIVPRIEESYGTFFVTVDIGEIAMQDTDSANDKNKKNKGGPK

Nucleotide


Download         Length: 639 bp        

>NTDB_id=427897 G8E00_RS01570 WP_166221533.1 340612..341250(+) (pilN) [Acinetobacter shaoyimingii strain 323-1]
ATGGCAAAAATTAACTTACTCCCTTGGCGTGAAGAGCGACGAGAAGAGCGAAAAAAACAATTTATCCTTTTTTGTGTGCT
GAGTGCGGTATTGGCTGCAGTAATGGTGTTAGCAACATGGTTCTTTTTAAATCAAAAACTGAATGACCATGAACAAGCAA
ATCAGTTGGTAAGTAGTACAAACCAAACTTTAGATGAACAACTTAAAACCTTGGATGGACTTGAAGAACAACGTCAAGCA
GTCATTGATCGAATGAAATTAATTCAAGGTCTAGAAGGTCAACGTCCAGTGACTGTACGTTTGATTGATGAGCTTGTACG
CGTTATGCCTGCAAATGCATATGTGACTAAATTTACACGACTAGGTGATAAATTTACCATTGAGGGTCGTGCAGAAAGTC
CAAATACAGTTGCAGAGTTACTTCGTAATTTAGAAGCTTCAGAATGGTATAGAAATGCATTCATGAACTCATTCCTTGCA
GTTGAGGAAAAGAAAGAGGCTCCCCAATCTTCTATAGTCCCAAGAATTGAAGAATCCTATGGCACTTTTTTTGTTACAGT
CGATATTGGTGAAATTGCAATGCAAGACACTGATTCGGCGAATGATAAAAACAAAAAAAATAAAGGAGGTCCTAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8RSH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

65.728

100

0.66
  comN Acinetobacter baylyi ADP1

67.876

91.038

0.618