Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G7038_RS11400 Genome accession   NZ_CP049756
Coordinates   2355940..2356374 (-) Length   144 a.a.
NCBI ID   WP_150332210.1    Uniprot ID   -
Organism   Pasteurella multocida strain KVNON-213     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2350940..2361374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7038_RS11370 - 2351522..2351770 (-) 249 WP_115299813.1 GNAT family N-acetyltransferase -
  G7038_RS11375 yacG 2351770..2351973 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  G7038_RS11380 coaE 2351984..2352604 (-) 621 WP_115299814.1 dephospho-CoA kinase -
  G7038_RS11385 - 2352616..2353341 (-) 726 WP_115299815.1 A24 family peptidase -
  G7038_RS11390 pilC 2353341..2354552 (-) 1212 WP_115299816.1 type II secretion system F family protein Machinery gene
  G7038_RS11395 pilB 2354552..2355940 (-) 1389 WP_150332209.1 GspE/PulE family protein Machinery gene
  G7038_RS11400 pilA 2355940..2356374 (-) 435 WP_150332210.1 prepilin peptidase-dependent pilin Machinery gene
  G7038_RS11405 ampD 2356534..2357100 (+) 567 WP_005719130.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  G7038_RS11410 rppH 2357686..2358282 (+) 597 WP_083004799.1 RNA pyrophosphohydrolase -
  G7038_RS11415 - 2358285..2359079 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -
  G7038_RS11420 lgt 2359089..2359892 (+) 804 WP_005751073.1 prolipoprotein diacylglyceryl transferase -
  G7038_RS11425 - 2359898..2360749 (+) 852 WP_115097855.1 thymidylate synthase -
  G7038_RS11430 tadA 2360776..2361264 (+) 489 WP_083004788.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15028.45 Da        Isoelectric Point: 9.1281

>NTDB_id=427691 G7038_RS11400 WP_150332210.1 2355940..2356374(-) (pilA) [Pasteurella multocida strain KVNON-213]
MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNSTTNCNAGSHGIR
ADAAASKKYLKAITVKAGVITVTGQGGLEGISYTLTASGNAAQGVSWTVNCGAQSDIFPAGFCA

Nucleotide


Download         Length: 435 bp        

>NTDB_id=427691 G7038_RS11400 WP_150332210.1 2355940..2356374(-) (pilA) [Pasteurella multocida strain KVNON-213]
ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT
TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCTGCTC
CTTATCGTGCCGAGGTAGAACTTTGTATCTATAATACAAATAGTACAACGAATTGTAATGCAGGAAGTCATGGTATTCGT
GCTGATGCGGCAGCAAGTAAAAAATATTTAAAAGCCATCACGGTTAAAGCTGGGGTAATTACTGTCACTGGACAAGGGGG
CTTGGAAGGAATTAGCTATACGCTGACAGCGAGTGGTAACGCAGCTCAAGGTGTTTCTTGGACAGTGAATTGTGGTGCTC
AATCTGACATTTTCCCAGCAGGATTTTGCGCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(42-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

63.194

100

0.632
  pilA Haemophilus influenzae Rd KW20

61.111

100

0.611
  pilA Glaesserella parasuis strain SC1401

52.349

100

0.542
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

36.735

100

0.375
  pilA Vibrio cholerae strain A1552

36.735

100

0.375
  pilA Vibrio cholerae C6706

36.735

100

0.375