Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G7038_RS11390 Genome accession   NZ_CP049756
Coordinates   2353341..2354552 (-) Length   403 a.a.
NCBI ID   WP_115299816.1    Uniprot ID   -
Organism   Pasteurella multocida strain KVNON-213     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2348341..2359552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7038_RS11360 raiA 2349117..2349434 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  G7038_RS11365 - 2349679..2351052 (-) 1374 WP_096743226.1 sodium:alanine symporter family protein -
  G7038_RS11370 - 2351522..2351770 (-) 249 WP_115299813.1 GNAT family N-acetyltransferase -
  G7038_RS11375 yacG 2351770..2351973 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  G7038_RS11380 coaE 2351984..2352604 (-) 621 WP_115299814.1 dephospho-CoA kinase -
  G7038_RS11385 - 2352616..2353341 (-) 726 WP_115299815.1 A24 family peptidase -
  G7038_RS11390 pilC 2353341..2354552 (-) 1212 WP_115299816.1 type II secretion system F family protein Machinery gene
  G7038_RS11395 pilB 2354552..2355940 (-) 1389 WP_150332209.1 GspE/PulE family protein Machinery gene
  G7038_RS11400 pilA 2355940..2356374 (-) 435 WP_150332210.1 prepilin peptidase-dependent pilin Machinery gene
  G7038_RS11405 ampD 2356534..2357100 (+) 567 WP_005719130.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  G7038_RS11410 rppH 2357686..2358282 (+) 597 WP_083004799.1 RNA pyrophosphohydrolase -
  G7038_RS11415 - 2358285..2359079 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46069.05 Da        Isoelectric Point: 9.7864

>NTDB_id=427689 G7038_RS11390 WP_115299816.1 2353341..2354552(-) (pilC) [Pasteurella multocida strain KVNON-213]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLLHFIPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=427689 G7038_RS11390 WP_115299816.1 2353341..2354552(-) (pilC) [Pasteurella multocida strain KVNON-213]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAGCAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTACATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCATCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTTGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCCACACAAGATCGTTACTTAACAAAACAGGAATATCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGACGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTGTTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAACATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTGCAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAATTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATCGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATCTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.395

100

0.486
  pilC Haemophilus influenzae 86-028NP

48.148

100

0.484
  pilC Glaesserella parasuis strain SC1401

39.259

100

0.395