Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   TEH_RS00185 Genome accession   NC_016052
Coordinates   37867..39108 (+) Length   413 a.a.
NCBI ID   WP_014123433.1    Uniprot ID   A0A2H6CQY1
Organism   Tetragenococcus halophilus NBRC 12172     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32867..44108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TEH_RS00160 (TEH_00300) mscL 32883..33347 (-) 465 WP_070105430.1 large conductance mechanosensitive channel protein MscL -
  TEH_RS00165 (TEH_00310) yfmF 33553..34821 (+) 1269 WP_014123429.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  TEH_RS00170 (TEH_00320) yfmH 34814..36112 (+) 1299 WP_014123430.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  TEH_RS00175 (TEH_00330) - 36209..37090 (+) 882 WP_014123431.1 helix-turn-helix domain-containing protein -
  TEH_RS00180 (TEH_00340) pgsA 37146..37727 (+) 582 WP_014123432.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  TEH_RS00185 (TEH_00350) cinA 37867..39108 (+) 1242 WP_014123433.1 competence/damage-inducible protein A Machinery gene
  TEH_RS00190 (TEH_00360) recA 39222..40265 (+) 1044 WP_014123434.1 recombinase RecA Machinery gene
  TEH_RS00195 (TEH_00370) rny 40523..42079 (+) 1557 WP_014123435.1 ribonuclease Y -
  TEH_RS00200 (TEH_00380) treR 42133..42849 (-) 717 WP_041591733.1 trehalose operon repressor -
  TEH_RS00205 (TEH_00390) pgmB 42913..43563 (-) 651 WP_014123437.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45585.67 Da        Isoelectric Point: 4.6540

>NTDB_id=42641 TEH_RS00185 WP_014123433.1 37867..39108(+) (cinA) [Tetragenococcus halophilus NBRC 12172]
MKAEIIAVGTEILLGQIDNTNTTFLAEELAGLGIEVYYQSVVGDNPKRLEEALELADQRSDLTVLCGGLGPTDDDLTKQV
TAKHVGQELVTDEGGYQNLLVFFEKRERPMTENNRLQALVFKDGESLQNSNGLAVGIFYQTPTGNSYLLLPGPPNELKPM
FFNEAIPLLQNHFQTDEQLISRVLRFYGIGESELVTKLADLIKHQSNPTIASYAKPNEVTLRLTVSTTDKNDGKQKLDQM
EEVILDRVGDYFYGYGENNSLVEVVVELLKKQKKTVSAAESLTAGSFQAMLGSVSGVSEVFPGGFVTYSETTKEQLLNLD
SKMLEKYGTVSKECAEAMAIQAKKLAHSDFALSFTGVAGPDSLEDQKAGTVWIGLATEEGVESYLYHFTRNRNYIRHSAV
MTGLDLLRKKLIK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=42641 TEH_RS00185 WP_014123433.1 37867..39108(+) (cinA) [Tetragenococcus halophilus NBRC 12172]
ATGAAAGCAGAAATCATAGCAGTAGGCACAGAAATTTTGTTAGGACAAATTGATAATACGAATACAACTTTTTTAGCGGA
AGAATTAGCTGGATTAGGAATTGAAGTTTATTATCAAAGTGTTGTAGGAGACAATCCTAAACGCTTGGAAGAAGCATTGG
AGCTAGCGGACCAAAGAAGTGATTTAACTGTTTTGTGTGGGGGATTAGGTCCTACAGACGATGACCTAACAAAACAAGTT
ACAGCAAAACATGTGGGACAAGAGTTAGTGACAGATGAAGGGGGTTATCAAAACTTATTAGTATTTTTTGAAAAACGAGA
ACGACCAATGACAGAAAATAATCGCTTACAAGCTTTAGTTTTCAAAGATGGAGAATCTTTACAAAATAGTAATGGTTTGG
CTGTAGGGATTTTTTATCAAACACCGACAGGTAACTCTTATTTGTTATTACCAGGGCCACCTAATGAATTAAAACCGATG
TTTTTTAATGAAGCTATTCCTTTATTACAAAATCATTTTCAAACAGATGAACAGTTAATTTCGCGCGTGTTGCGTTTTTA
TGGCATTGGAGAATCAGAACTTGTTACTAAATTAGCAGACCTAATCAAACATCAAAGCAATCCAACGATTGCATCATATG
CTAAACCTAATGAAGTTACCTTGCGTTTGACTGTTAGCACCACAGATAAAAATGATGGAAAACAAAAACTGGATCAAATG
GAAGAAGTAATATTAGATCGTGTTGGTGATTACTTTTATGGTTATGGAGAAAATAATTCTTTAGTAGAAGTTGTTGTTGA
ACTATTAAAGAAACAGAAAAAAACTGTAAGTGCAGCTGAAAGTTTGACTGCAGGTAGTTTTCAAGCAATGTTAGGTAGTG
TTTCTGGTGTTTCCGAAGTTTTTCCTGGTGGTTTTGTTACTTACTCAGAAACCACCAAGGAACAGTTACTAAATCTTGAT
TCGAAAATGTTAGAAAAATATGGAACGGTTAGTAAAGAATGTGCAGAAGCGATGGCAATACAAGCGAAAAAACTAGCCCA
TAGTGACTTTGCACTTTCTTTTACAGGAGTAGCCGGACCGGATTCACTAGAAGATCAAAAAGCAGGGACAGTTTGGATAG
GTTTAGCAACTGAAGAAGGTGTGGAAAGTTATTTATACCACTTTACTCGTAATCGGAACTATATTCGTCATAGCGCAGTC
ATGACTGGCTTAGATTTATTAAGGAAAAAATTAATAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H6CQY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.257

100

0.533
  cinA Streptococcus mitis NCTC 12261

52.257

100

0.533
  cinA Streptococcus pneumoniae TIGR4

51.781

100

0.528
  cinA Streptococcus pneumoniae Rx1

51.544

100

0.525
  cinA Streptococcus pneumoniae R6

51.544

100

0.525
  cinA Streptococcus pneumoniae D39

51.306

100

0.523
  cinA Streptococcus mutans UA159

50.962

100

0.513
  cinA Bacillus subtilis subsp. subtilis str. 168

45.366

99.274

0.45
  cinA Streptococcus suis isolate S10

43.614

100

0.438

Multiple sequence alignment