Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   IFO96_RS03625 Genome accession   NZ_CP062211
Coordinates   748241..749626 (-) Length   461 a.a.
NCBI ID   WP_001025174.1    Uniprot ID   -
Organism   Escherichia coli strain L3Cip3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 743241..754626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFO96_RS03590 (IFO96_03590) mutT 743687..744076 (+) 390 WP_000736013.1 8-oxo-dGTP diphosphatase MutT -
  IFO96_RS03595 (IFO96_03595) yacG 744176..744373 (-) 198 WP_000005042.1 DNA gyrase inhibitor YacG -
  IFO96_RS03600 (IFO96_03600) zapD 744383..745126 (-) 744 WP_001194734.1 cell division protein ZapD -
  IFO96_RS03605 (IFO96_03605) coaE 745126..745746 (-) 621 WP_001269520.1 dephospho-CoA kinase -
  IFO96_RS03610 (IFO96_03610) - 745771..745815 (+) 45 WP_120795372.1 protein YacM -
  IFO96_RS03615 (IFO96_03615) guaC 745971..747014 (+) 1044 WP_001217338.1 GMP reductase -
  IFO96_RS03620 (IFO96_03620) hofC 747049..748251 (-) 1203 WP_000157236.1 protein transport protein HofC -
  IFO96_RS03625 (IFO96_03625) pilB 748241..749626 (-) 1386 WP_001025174.1 type II secretion system protein GspE Machinery gene
  IFO96_RS03630 (IFO96_03630) pilA 749636..750076 (-) 441 WP_000360895.1 prepilin peptidase-dependent pilin Machinery gene
  IFO96_RS03635 (IFO96_03635) nadC 750279..751172 (-) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IFO96_RS03640 (IFO96_03640) ampD 751260..751811 (+) 552 WP_100004867.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IFO96_RS03645 (IFO96_03645) ampE 751808..752662 (+) 855 WP_000172000.1 beta-lactamase regulator AmpE -
  IFO96_RS03650 (IFO96_03650) aroP 752705..754078 (-) 1374 WP_072133621.1 aromatic amino acid transporter AroP -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50480.22 Da        Isoelectric Point: 6.5385

>NTDB_id=424077 IFO96_RS03625 WP_001025174.1 748241..749626(-) (pilB) [Escherichia coli strain L3Cip3]
MNIPQLTALCLRYQGVLLDASEEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQMEGHASRTQQTLPVAVQEKHQP
KAELLARTLQSALEQRASDIHIEPADNAYRIRLRIDGVLHPLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVEL
AGNAVSFRIATLPCRGGEKVVLRLLQQVGQALDVNTLGMQPLQLADFAHALQQPQGLVLVTGPTGSGKTVTLYSALQTLN
TADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNS
TCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRRQQGEPIHIPVNVWPSPLPHWQAPGCVHCYHGFYGRTALFE
VLPITPVIRQLISANTDVESLETHARQAGMCTLFENGCLAVEQGLTTFEELIRVLGMPHGE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=424077 IFO96_RS03625 WP_001025174.1 748241..749626(-) (pilB) [Escherichia coli strain L3Cip3]
ATGAATATTCCACAGCTCACGGCCCTGTGTCTGCGTTATCAGGGAGTCTTGCTGGATGCCAGCGAAGAAGTGGTTCATGT
TGCGGTGGTCGATGCCCCCTCACATGAGTTGCTGGACGCATTGCATTTCGCTACCACCAAACGTATTGAGATCACCTGCT
GGACGCGCCAACAAATGGAAGGTCACGCCAGTCGCACACAACAGACATTGCCCGTAGCTGTTCAGGAGAAGCATCAGCCC
AAAGCAGAGTTGCTAGCTCGAACGTTACAATCTGCGCTGGAACAACGCGCGTCTGATATTCATATCGAACCAGCGGACAA
TGCCTACCGCATCCGCTTGCGTATCGACGGCGTATTGCATCCTTTACCGGATGTTTCACCGGATGCCGGAGTCGCATTAA
CCGCCAGATTAAAAGTGCTGGGAAACCTGGATATTGCGGAACATCGCCTGCCGCAGGACGGGCAATTCACTGTCGAACTG
GCAGGAAACGCCGTCTCATTTCGTATTGCGACCTTACCATGTCGGGGTGGTGAAAAGGTGGTATTAAGGTTGTTACAGCA
GGTGGGTCAGGCACTGGATGTCAACACGCTTGGAATGCAGCCGTTACAACTGGCGGACTTTGCTCATGCCTTGCAACAAC
CACAGGGACTGGTGCTGGTAACTGGCCCTACCGGCAGCGGCAAAACGGTCACGCTTTATAGTGCCCTGCAAACGCTGAAT
ACCGCTGACATTAATATTTGTAGCGTCGAAGATCCGGTTGAGATCCCCATAGCCGGACTAAACCAGACGCAAATCCATCC
GCGTGCCGGGCTCACCTTTCAGGGCGTTTTGCGTGCGTTATTGCGCCAGGATCCTGACGTCATCATGATCGGAGAGATCC
GCGATGGCGAAACAGCAGAGATCGCTATTAAAGCGGCGCAAACTGGTCACCTGGTGTTGTCTACCCTACACACTAATTCC
ACCTGCGAAACGCTGGTACGTTTACAGCAAATGGGGGTCGCCCGCTGGATGCTATCATCGGCGCTTACGCTGGTAATAGC
CCAGCGTCTGGTACGCAAACTTTGCCCACATTGTCGCCGGCAGCAAGGGGAGCCCATCCATATTCCAGTCAATGTATGGC
CGTCGCCGCTGCCCCACTGGCAGGCACCCGGTTGTGTACATTGCTACCACGGTTTTTATGGTCGTACGGCCTTATTTGAA
GTTCTGCCCATAACGCCGGTCATTCGTCAGCTTATTTCCGCTAATACCGACGTTGAATCGCTGGAAACGCACGCACGACA
GGCGGGTATGTGTACGCTTTTTGAAAACGGCTGCCTGGCCGTGGAGCAAGGCTTAACCACCTTTGAAGAGTTAATCCGCG
TACTGGGGATGCCGCATGGCGAGTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(88-353)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(8-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Glaesserella parasuis strain SC1401

41.253

100

0.414
  pilB Legionella pneumophila strain ERS1305867

49.738

82.863

0.412
  pilB Acinetobacter baylyi ADP1

40.171

100

0.408
  pilB Vibrio campbellii strain DS40M4

48.062

83.948

0.403
  pilB Vibrio cholerae strain A1552

46.465

85.9

0.399
  pilB Vibrio parahaemolyticus RIMD 2210633

46.373

83.731

0.388
  pilB Haemophilus influenzae 86-028NP

44.961

83.948

0.377
  pilB Acinetobacter baumannii D1279779

43.655

85.466

0.373
  pilB Haemophilus influenzae Rd KW20

44.444

83.948

0.373
  pilF Neisseria gonorrhoeae MS11

44.156

83.514

0.369
  pilF Thermus thermophilus HB27

40.587

88.72

0.36