Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   G3U99_RS15900 Genome accession   NZ_CP048693
Coordinates   3350056..3350325 (-) Length   89 a.a.
NCBI ID   WP_006959342.1    Uniprot ID   -
Organism   Vibrio coralliilyticus OCN008     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3345056..3355325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS15875 (G3U99_15805) lapB 3345354..3346523 (-) 1170 WP_006959331.1 lipopolysaccharide assembly protein LapB -
  G3U99_RS15880 (G3U99_15810) - 3346549..3346830 (-) 282 WP_021457153.1 LapA family protein -
  G3U99_RS15885 (G3U99_15815) ihfB 3346969..3347250 (-) 282 WP_006959336.1 integration host factor subunit beta -
  G3U99_RS15890 (G3U99_15820) rpsA 3347461..3349131 (-) 1671 WP_006959338.1 30S ribosomal protein S1 -
  G3U99_RS15895 (G3U99_15825) cmk 3349235..3349915 (-) 681 WP_019277885.1 (d)CMP kinase -
  G3U99_RS15900 (G3U99_15830) comEA 3350056..3350325 (-) 270 WP_006959342.1 ComEA family DNA-binding protein Machinery gene
  G3U99_RS15905 (G3U99_15835) ppiD 3350495..3352354 (-) 1860 WP_006959344.1 peptidylprolyl isomerase -
  G3U99_RS15910 (G3U99_15840) - 3352528..3352800 (-) 273 WP_004414742.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 9360.81 Da        Isoelectric Point: 5.0181

>NTDB_id=422410 G3U99_RS15900 WP_006959342.1 3350056..3350325(-) (comEA) [Vibrio coralliilyticus OCN008]
MVLAVYSPTTVSAEKTTNSEYAGIEITVNVNTAEAAELAALLTGVGAKKAEAIVQYRDENGPFLKVTDLALVKGIGPALI
DKNLSRIKL

Nucleotide


Download         Length: 270 bp        

>NTDB_id=422410 G3U99_RS15900 WP_006959342.1 3350056..3350325(-) (comEA) [Vibrio coralliilyticus OCN008]
ATGGTGCTCGCGGTATATAGCCCAACTACTGTATCGGCTGAAAAAACCACCAACTCAGAATACGCTGGAATAGAGATTAC
AGTGAATGTTAATACGGCTGAAGCGGCTGAATTAGCGGCGCTACTAACTGGTGTTGGTGCGAAAAAAGCTGAGGCTATTG
TTCAATATAGGGACGAAAACGGTCCCTTTTTGAAGGTGACTGATTTGGCTTTGGTTAAAGGTATTGGCCCCGCTTTAATA
GACAAAAACCTCAGTCGTATAAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(27-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

52.809

100

0.528
  comEA Vibrio campbellii strain DS40M4

51.685

100

0.517
  comEA Vibrio cholerae strain A1552

53.571

94.382

0.506
  comEA Vibrio cholerae C6706

53.571

94.382

0.506
  comEA/comE1 Glaesserella parasuis strain SC1401

41.667

100

0.449
  comEA Acinetobacter baylyi ADP1

50.725

77.528

0.393
  comE1/comEA Haemophilus influenzae Rd KW20

55

67.416

0.371

Multiple sequence alignment