Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | G3M63_RS13920 | Genome accession | NZ_CP048629 |
| Coordinates | 2991365..2991655 (+) | Length | 96 a.a. |
| NCBI ID | WP_150301204.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. OIL-1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2986365..2996655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M63_RS13895 (G3M63_13895) | - | 2987230..2987868 (+) | 639 | WP_163983524.1 | SPOR domain-containing protein | - |
| G3M63_RS13900 (G3M63_13900) | - | 2987931..2988413 (+) | 483 | WP_150301201.1 | CvpA family protein | - |
| G3M63_RS13910 (G3M63_13910) | purF | 2988465..2989976 (+) | 1512 | WP_150301202.1 | amidophosphoribosyltransferase | - |
| G3M63_RS13915 (G3M63_13915) | - | 2989984..2991195 (+) | 1212 | WP_150301203.1 | O-succinylhomoserine sulfhydrylase | - |
| G3M63_RS13920 (G3M63_13920) | comE1/comEA | 2991365..2991655 (+) | 291 | WP_150301204.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| G3M63_RS19760 | - | 2991724..2992269 (-) | 546 | WP_371923588.1 | methyl-accepting chemotaxis protein | - |
| G3M63_RS19765 | - | 2992588..2993172 (-) | 585 | Protein_2757 | HAMP domain-containing protein | - |
| G3M63_RS13930 (G3M63_13930) | rnd | 2993647..2994783 (+) | 1137 | WP_223825051.1 | ribonuclease D | - |
| G3M63_RS13935 (G3M63_13935) | - | 2994786..2995079 (+) | 294 | WP_150301206.1 | YcgL domain-containing protein | - |
| G3M63_RS13940 (G3M63_13940) | - | 2995111..2996334 (-) | 1224 | WP_163983526.1 | pyridoxal-dependent decarboxylase, exosortase A system-associated | - |
| G3M63_RS13945 (G3M63_13945) | - | 2996354..2996584 (-) | 231 | WP_150301208.1 | DUF3820 family protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 9809.21 Da Isoelectric Point: 4.5822
>NTDB_id=421976 G3M63_RS13920 WP_150301204.1 2991365..2991655(+) (comE1/comEA) [Pseudomonas sp. OIL-1]
MKAIYLAVLFVLSSWFALPVVAETSAAPASVISVNINNASAAEIAETLQGVGVAKADAIVAYREANGSFASVESLSEVSG
IGAATVEKNRARIALQ
MKAIYLAVLFVLSSWFALPVVAETSAAPASVISVNINNASAAEIAETLQGVGVAKADAIVAYREANGSFASVESLSEVSG
IGAATVEKNRARIALQ
Nucleotide
Download Length: 291 bp
>NTDB_id=421976 G3M63_RS13920 WP_150301204.1 2991365..2991655(+) (comE1/comEA) [Pseudomonas sp. OIL-1]
ATGAAAGCCATATATCTTGCTGTTCTGTTTGTCCTGTCGTCCTGGTTCGCGCTCCCGGTTGTTGCCGAGACATCCGCGGC
CCCGGCATCGGTTATCTCGGTCAACATCAATAACGCCAGCGCCGCGGAAATCGCCGAAACCCTGCAGGGTGTCGGTGTTG
CCAAGGCGGATGCCATTGTTGCCTACCGCGAAGCCAATGGTAGTTTTGCTTCCGTCGAGTCCCTGTCCGAAGTATCGGGT
ATTGGTGCGGCTACCGTCGAAAAAAACCGTGCCCGTATTGCTCTGCAGTAA
ATGAAAGCCATATATCTTGCTGTTCTGTTTGTCCTGTCGTCCTGGTTCGCGCTCCCGGTTGTTGCCGAGACATCCGCGGC
CCCGGCATCGGTTATCTCGGTCAACATCAATAACGCCAGCGCCGCGGAAATCGCCGAAACCCTGCAGGGTGTCGGTGTTG
CCAAGGCGGATGCCATTGTTGCCTACCGCGAAGCCAATGGTAGTTTTGCTTCCGTCGAGTCCCTGTCCGAAGTATCGGGT
ATTGGTGCGGCTACCGTCGAAAAAAACCGTGCCCGTATTGCTCTGCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
44.545 |
100 |
0.51 |
| comEA | Vibrio cholerae C6706 |
48.454 |
100 |
0.49 |
| comEA | Vibrio cholerae strain A1552 |
48.454 |
100 |
0.49 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
52.273 |
91.667 |
0.479 |
| comEA | Vibrio campbellii strain DS40M4 |
41.584 |
100 |
0.437 |
| comE | Neisseria gonorrhoeae MS11 |
39.773 |
91.667 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
39.773 |
91.667 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
39.773 |
91.667 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
39.773 |
91.667 |
0.365 |
| comEA | Legionella pneumophila strain ERS1305867 |
34.653 |
100 |
0.365 |
| comEA | Legionella pneumophila str. Paris |
34.653 |
100 |
0.365 |