Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCGT_RS09500 Genome accession   NC_015930
Coordinates   1873595..1874089 (-) Length   164 a.a.
NCBI ID   WP_003133131.1    Uniprot ID   A0A1I4HNK8
Organism   Lactococcus garvieae ATCC 49156     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1868595..1879089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCGT_RS09470 (LCGT_1873) recX 1868922..1869755 (+) 834 WP_014025498.1 recombination regulator RecX -
  LCGT_RS09475 (LCGT_1874) - 1869838..1870686 (+) 849 WP_003133137.1 MurR/RpiR family transcriptional regulator -
  LCGT_RS09480 (LCGT_1875) - 1870718..1871026 (+) 309 WP_014025499.1 DUF960 domain-containing protein -
  LCGT_RS09485 (LCGT_1876) - 1871060..1871827 (-) 768 WP_014025500.1 metallophosphoesterase -
  LCGT_RS09490 (LCGT_1877) - 1871911..1873119 (-) 1209 WP_014025501.1 hypothetical protein -
  LCGT_RS09495 (LCGT_1878) rpsR 1873236..1873481 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  LCGT_RS09500 (LCGT_1879) ssb 1873595..1874089 (-) 495 WP_003133131.1 single-stranded DNA-binding protein Machinery gene
  LCGT_RS09505 (LCGT_1880) rpsF 1874127..1874420 (-) 294 WP_003133129.1 30S ribosomal protein S6 -
  LCGT_RS09510 - 1874607..1874819 (-) 213 WP_016171080.1 hypothetical protein -
  LCGT_RS09515 (LCGT_1881) - 1875290..1876753 (+) 1464 WP_003133128.1 amino acid permease -
  LCGT_RS09520 (LCGT_1882) dnaX 1876787..1878445 (-) 1659 WP_014025502.1 DNA polymerase III subunit gamma/tau -
  LCGT_RS09525 (LCGT_1883) - 1878458..1879078 (-) 621 WP_014025503.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18003.88 Da        Isoelectric Point: 4.9533

>NTDB_id=42119 LCGT_RS09500 WP_003133131.1 1873595..1874089(-) (ssb) [Lactococcus garvieae ATCC 49156]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNATPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=42119 LCGT_RS09500 WP_003133131.1 1873595..1874089(-) (ssb) [Lactococcus garvieae ATCC 49156]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATATACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGCGTCATCT
GGCGTCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAGAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCGGGCTCTAACA
GCTCAGCAGGAAATGCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I4HNK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.598
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.933

100

0.585
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372

Multiple sequence alignment