Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M655_RS12185 Genome accession   NZ_CP048274
Coordinates   2420784..2422028 (+) Length   414 a.a.
NCBI ID   WP_026557306.1    Uniprot ID   A0A9X7T7P7
Organism   Brevibacillus sp. NSP2.1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2415784..2427028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M655_RS28060 (M655_011990) - 2416727..2416918 (-) 192 WP_081414703.1 S-layer homology domain-containing protein -
  M655_RS12165 (M655_011995) - 2416943..2417722 (+) 780 WP_005834105.1 YmfK family protein -
  M655_RS12170 (M655_012000) - 2417735..2418640 (+) 906 WP_005834104.1 helix-turn-helix domain-containing protein -
  M655_RS12175 (M655_012005) rimO 2418753..2420099 (+) 1347 WP_005834102.1 30S ribosomal protein S12 methylthiotransferase RimO -
  M655_RS12180 (M655_012010) pgsA 2420100..2420675 (+) 576 WP_005834099.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M655_RS12185 (M655_012015) cinA 2420784..2422028 (+) 1245 WP_026557306.1 competence/damage-inducible protein A Machinery gene
  M655_RS12190 (M655_012020) - 2422036..2423625 (+) 1590 WP_007786887.1 DEAD/DEAH box helicase -
  M655_RS12195 (M655_012025) recA 2423795..2424853 (+) 1059 WP_025846053.1 recombinase RecA Machinery gene
  M655_RS12200 (M655_012030) - 2424929..2425576 (+) 648 WP_005834091.1 RecX family transcriptional regulator -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44756.25 Da        Isoelectric Point: 4.9143

>NTDB_id=420502 M655_RS12185 WP_026557306.1 2420784..2422028(+) (cinA) [Brevibacillus sp. NSP2.1]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNSERLRQVIALASGRSDLVILTGGLGPTQDDLTKET
VAAHVGVGLETNQEAMERIEQFFLQRGIVMTENNRKQALVLSGSLVFSNDFGMAPGMAIRHDSCTFVLLPGPPSELYPMV
DRYVMPYLTDLLPEKQVFHSHVLRFYGIGESALEERLLDLIEKQDNPTIAPYAKEFEVTLRLTARAATAEEGEALILPVE
EEIRKRVGEYVYGMGEDSSLHAVLVSELKKRNETIACAESCTGGTVASLITSVPGSSSVFQGGVVCYTNDVKNRLLDVPE
EVLNTDGAVSRQTAQLLAENVRAKLGATYGVSVTGVAGPDPSEGKPVGLVYVGIAGEGMPTVVKELRLAGRRQAIVGRAA
KFALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=420502 M655_RS12185 WP_026557306.1 2420784..2422028(+) (cinA) [Brevibacillus sp. NSP2.1]
ATGAGAGCGGAGATTATCGCAGTAGGTACCGAGCTTTTGCTAGGCCAAATTGCCAACACAAATGCCCAGTTTCTGTCGCA
GAAGCTGGCGGAAATTGGCGTGGGAGTCTATTTCCATACGGTTGTGGGAGATAACTCAGAGCGATTGCGGCAGGTCATTG
CGCTCGCATCCGGCCGATCCGATCTCGTCATTTTGACAGGGGGGCTTGGACCGACCCAGGATGACCTGACAAAAGAAACG
GTGGCAGCACACGTGGGCGTCGGGCTGGAAACGAACCAGGAAGCCATGGAAAGAATTGAACAATTCTTTTTGCAACGTGG
GATTGTCATGACGGAGAACAATCGGAAGCAGGCGCTGGTGCTCTCAGGCAGCCTTGTCTTTTCCAACGACTTCGGGATGG
CGCCTGGGATGGCGATCCGTCATGACAGTTGTACGTTCGTGCTGCTCCCTGGACCGCCAAGCGAGCTGTACCCGATGGTG
GATCGCTACGTGATGCCGTACTTGACAGACCTGTTGCCAGAGAAGCAAGTATTCCATTCCCATGTGCTGCGCTTCTACGG
AATCGGGGAATCCGCTCTGGAGGAGCGGCTGCTGGATTTGATTGAAAAGCAGGACAACCCGACGATCGCGCCGTATGCCA
AGGAGTTTGAAGTGACACTCAGGCTCACGGCGAGAGCGGCTACGGCAGAAGAAGGGGAAGCGCTGATTTTGCCGGTGGAA
GAAGAAATTCGCAAGCGTGTTGGCGAGTATGTGTACGGGATGGGAGAAGATTCGTCCCTGCATGCCGTCTTGGTGAGCGA
GCTGAAAAAGCGAAACGAAACGATCGCATGTGCGGAAAGTTGTACAGGCGGCACGGTCGCTTCGCTGATTACGTCCGTTC
CCGGCAGCTCGTCTGTTTTTCAAGGCGGCGTAGTCTGTTATACAAACGATGTGAAAAACCGGCTGCTTGACGTGCCCGAA
GAGGTTTTGAATACGGACGGTGCGGTCAGTCGGCAAACGGCGCAGTTGCTTGCAGAAAATGTGCGAGCCAAGCTGGGAGC
CACATACGGCGTGTCCGTGACGGGTGTGGCTGGACCCGACCCTTCGGAGGGCAAGCCTGTTGGCCTTGTCTACGTCGGAA
TTGCGGGTGAAGGGATGCCCACAGTAGTAAAAGAACTGCGCCTGGCTGGCAGAAGACAGGCGATTGTTGGGCGTGCCGCC
AAATTTGCGCTATTTTATGCGCTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(259-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.574

99.758

0.514
  cinA Streptococcus mitis SK321

47.458

99.758

0.473
  cinA Streptococcus mitis NCTC 12261

47.458

99.758

0.473
  cinA Streptococcus pneumoniae TIGR4

47.215

99.758

0.471
  cinA Streptococcus pneumoniae Rx1

46.973

99.758

0.469
  cinA Streptococcus pneumoniae R6

46.973

99.758

0.469
  cinA Streptococcus pneumoniae D39

46.731

99.758

0.466
  cinA Streptococcus mutans UA159

45.614

96.377

0.44
  cinA Streptococcus suis isolate S10

41.013

95.411

0.391

Multiple sequence alignment