Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   M654_RS03000 Genome accession   NZ_CP048273
Coordinates   608234..608575 (+) Length   113 a.a.
NCBI ID   WP_026589029.1    Uniprot ID   A0A6I7F8E9
Organism   Bacillus sp. NSP9.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 603234..613575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M654_RS02970 (M654_002970) - 604322..605161 (+) 840 WP_026589035.1 flagellar hook-basal body protein -
  M654_RS02975 (M654_002975) - 605210..606037 (+) 828 WP_026589034.1 flagellar hook-basal body protein -
  M654_RS02980 (M654_002980) fabZ 606250..606684 (+) 435 WP_026589033.1 3-hydroxyacyl-ACP dehydratase FabZ -
  M654_RS02985 (M654_002985) mscL 606754..607137 (+) 384 WP_026589032.1 large conductance mechanosensitive channel protein MscL -
  M654_RS02990 (M654_002990) - 607181..607594 (-) 414 WP_026589031.1 YwpF-like family protein -
  M654_RS02995 (M654_002995) - 607758..608129 (+) 372 WP_026589030.1 hypothetical protein -
  M654_RS03000 (M654_003000) ssbB 608234..608575 (+) 342 WP_026589029.1 single-stranded DNA-binding protein Machinery gene
  M654_RS03005 (M654_003005) - 608800..609756 (+) 957 WP_026589028.1 sugar-binding transcriptional regulator -
  M654_RS03010 (M654_003010) - 609753..610196 (+) 444 WP_026589027.1 transcriptional regulator GutM -
  M654_RS03015 (M654_003015) - 610193..610741 (+) 549 WP_026589026.1 PTS glucitol/sorbitol transporter subunit IIC -
  M654_RS03020 (M654_003020) - 610756..611763 (+) 1008 WP_026589025.1 PTS glucitol/sorbitol transporter subunit IIB -
  M654_RS03025 (M654_003025) - 611786..612154 (+) 369 WP_026589024.1 PTS glucitol/sorbitol transporter subunit IIA -
  M654_RS03030 (M654_003030) srlD 612169..612954 (+) 786 WP_026589023.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12516.30 Da        Isoelectric Point: 9.6531

>NTDB_id=420421 M654_RS03000 WP_026589029.1 608234..608575(+) (ssbB) [Bacillus sp. NSP9.1]
MFNQIMLVGRLTKDPELRYTPDGVPVANITLAVGRYFRNAAGEMETDFINCTLWRKTAENTAAYCRKGSIIGLAGRIQTQ
NGIDSEGNRFFKTEVVARSVRFIGGKAREPADA

Nucleotide


Download         Length: 342 bp        

>NTDB_id=420421 M654_RS03000 WP_026589029.1 608234..608575(+) (ssbB) [Bacillus sp. NSP9.1]
ATGTTTAATCAGATCATGCTGGTCGGGCGTTTGACGAAGGACCCGGAGCTTCGGTACACACCGGACGGCGTCCCGGTGGC
GAACATTACCTTGGCTGTCGGCCGGTATTTCAGAAATGCAGCCGGCGAAATGGAGACGGACTTTATCAATTGCACACTGT
GGCGCAAAACGGCTGAGAACACGGCTGCATATTGCAGAAAAGGCTCGATCATCGGGCTGGCTGGAAGAATTCAGACCCAA
AATGGGATTGATTCAGAAGGAAACCGGTTCTTTAAAACCGAAGTCGTTGCCCGTTCAGTACGATTTATAGGCGGAAAGGC
CCGTGAACCAGCCGATGCCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7F8E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.063

98.23

0.619
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

52.083

84.956

0.442
  ssb Vibrio cholerae strain A1552

38.596

100

0.389
  ssbB Lactococcus lactis subsp. cremoris KW2

39.623

93.805

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

38.889

95.575

0.372
  ssbA Streptococcus mutans UA159

38.889

95.575

0.372

Multiple sequence alignment