Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | GYM76_RS08330 | Genome accession | NZ_CP048263 |
| Coordinates | 1839989..1840288 (-) | Length | 99 a.a. |
| NCBI ID | WP_220225168.1 | Uniprot ID | - |
| Organism | Gilliamella sp. ESL0443 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1834989..1845288
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYM76_RS08310 (GYM76_08310) | moaE | 1836413..1836856 (-) | 444 | WP_255305717.1 | molybdopterin synthase catalytic subunit MoaE | - |
| GYM76_RS08315 (GYM76_08315) | moaD | 1836861..1837106 (-) | 246 | WP_220225165.1 | molybdopterin synthase sulfur carrier subunit | - |
| GYM76_RS08320 (GYM76_08320) | moaC | 1837114..1837599 (-) | 486 | WP_220225166.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
| GYM76_RS08325 (GYM76_08325) | priA | 1837788..1839944 (+) | 2157 | WP_220225167.1 | primosomal protein N' | - |
| GYM76_RS08330 (GYM76_08330) | comE1/comEA | 1839989..1840288 (-) | 300 | WP_220225168.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| GYM76_RS08335 (GYM76_08335) | - | 1840441..1842315 (-) | 1875 | WP_220225169.1 | SurA N-terminal domain-containing protein | - |
| GYM76_RS08340 (GYM76_08340) | lon | 1842443..1844878 (-) | 2436 | WP_220225170.1 | endopeptidase La | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10900.81 Da Isoelectric Point: 7.9732
>NTDB_id=420279 GYM76_RS08330 WP_220225168.1 1839989..1840288(-) (comE1/comEA) [Gilliamella sp. ESL0443]
MKIFTLLCLLFSSLLFSTVSFADSKTDVTIKEEQIVQVNINTATAEELSKVLTGIGMSKAKKIIEYREKFGPFVSIEQLK
EVSGIGQATLDKNIGKITL
MKIFTLLCLLFSSLLFSTVSFADSKTDVTIKEEQIVQVNINTATAEELSKVLTGIGMSKAKKIIEYREKFGPFVSIEQLK
EVSGIGQATLDKNIGKITL
Nucleotide
Download Length: 300 bp
>NTDB_id=420279 GYM76_RS08330 WP_220225168.1 1839989..1840288(-) (comE1/comEA) [Gilliamella sp. ESL0443]
ATGAAAATTTTTACACTATTATGCCTTTTATTTTCATCTTTACTTTTTTCAACAGTTAGTTTTGCTGATTCGAAAACAGA
TGTCACTATAAAAGAAGAGCAAATTGTACAAGTCAATATTAATACGGCAACAGCTGAAGAGCTAAGTAAAGTATTAACTG
GTATTGGGATGAGTAAGGCTAAGAAAATTATTGAGTATCGAGAAAAATTTGGTCCTTTTGTCTCGATAGAACAATTAAAG
GAAGTTTCTGGTATTGGTCAAGCAACGCTGGATAAAAATATAGGAAAAATCACTTTATAA
ATGAAAATTTTTACACTATTATGCCTTTTATTTTCATCTTTACTTTTTTCAACAGTTAGTTTTGCTGATTCGAAAACAGA
TGTCACTATAAAAGAAGAGCAAATTGTACAAGTCAATATTAATACGGCAACAGCTGAAGAGCTAAGTAAAGTATTAACTG
GTATTGGGATGAGTAAGGCTAAGAAAATTATTGAGTATCGAGAAAAATTTGGTCCTTTTGTCTCGATAGAACAATTAAAG
GAAGTTTCTGGTATTGGTCAAGCAACGCTGGATAAAAATATAGGAAAAATCACTTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
44.144 |
100 |
0.495 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
48.98 |
98.99 |
0.485 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
45.545 |
100 |
0.465 |
| comEA | Vibrio cholerae strain A1552 |
41.748 |
100 |
0.434 |
| comEA | Vibrio cholerae C6706 |
41.748 |
100 |
0.434 |
| comEA | Vibrio campbellii strain DS40M4 |
42.424 |
100 |
0.424 |
| comE | Neisseria gonorrhoeae MS11 |
41.758 |
91.919 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
41.758 |
91.919 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
41.758 |
91.919 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
41.758 |
91.919 |
0.384 |