Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SPPN_RS09715 Genome accession   NC_015875
Coordinates   1866550..1867806 (-) Length   418 a.a.
NCBI ID   WP_000642693.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1861550..1872806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS09700 (SPPN_09835) - 1862519..1863469 (-) 951 WP_000401882.1 N-acetylmuramoyl-L-alanine amidase family protein -
  SPPN_RS09705 (SPPN_09840) - 1863845..1865215 (-) 1371 WP_001036246.1 MATE family efflux transporter -
  SPPN_RS09710 (SPPN_09845) recA 1865330..1866466 (-) 1137 WP_044012269.1 recombinase RecA Machinery gene
  SPPN_RS09715 (SPPN_09850) cinA 1866550..1867806 (-) 1257 WP_000642693.1 competence/damage-inducible protein A Machinery gene
  SPPN_RS09720 (SPPN_09855) brpA 1867890..1868906 (-) 1017 WP_000239276.1 biofilm formation/cell division transcriptional regulator BrpA -
  SPPN_RS09725 (SPPN_09860) - 1868914..1869432 (-) 519 WP_000455532.1 GNAT family N-acetyltransferase -
  SPPN_RS09730 (SPPN_09865) tsaE 1869422..1869865 (-) 444 WP_000288231.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SPPN_RS09735 (SPPN_09870) comM 1870055..1870675 (-) 621 WP_000855698.1 hypothetical protein Regulator
  SPPN_RS09740 (SPPN_09875) - 1871713..1871940 (-) 228 Protein_1953 hypothetical protein -
  SPPN_RS12400 (SPPN_09880) - 1871954..1872130 (+) 177 WP_080673665.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45216.46 Da        Isoelectric Point: 4.5330

>NTDB_id=42023 SPPN_RS09715 WP_000642693.1 1866550..1867806(-) (cinA) [Streptococcus pseudopneumoniae IS7493]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLEIASQRSSLVILTGGLGPTEDDLTKQT
LAKFLGKELVFNPQAQEKLDIFFAQRPDYARTPNNERQAQIVEGAIPLPNETGLAVGGILEANGVTYVVLPGPPSELKPM
VLNQLLPKLMTGSKLYSRVLRFFGIGESQLVTILADLIDNQTDPTLAPYAKTGEVTLRLSTKASSQEEANQVLDILENQI
LDRQTFEDLSLRDLCYGYGEETSLASIVVEELKKQEKTITAAESLTAGLFQATVADFSGASSIFKGGFVTYSLEEKSNML
DIPVKDLEKHGVVSEFTAQKMAEQARNKTQSDFGLSLTGVAGPDSLEGHPAGTVYIGLAQEQGTEVIKVNIGGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=42023 SPPN_RS09715 WP_000642693.1 1866550..1867806(-) (cinA) [Streptococcus pseudopneumoniae IS7493]
ATGAAAGCAGAAATCATTGCTGTTGGAACAGAGATTTTGACAGGACAGATTGTCAATACCAATGCTCAGTTTTTGTCGGA
AAAACTAGCAGAAATTGGGGTAGACGTATATTTTCAGACGGCTGTAGGAGACAATGAAGCTCGTCTCTTGTCTTTACTTG
AGATTGCCAGTCAACGTAGCAGTCTGGTGATTTTGACAGGCGGTTTGGGACCAACTGAGGATGATTTGACCAAACAAACT
CTAGCTAAATTTTTAGGGAAAGAATTAGTCTTCAATCCTCAGGCTCAGGAGAAGTTGGATATCTTTTTTGCCCAGAGACC
AGACTATGCCCGAACACCGAATAACGAAAGACAAGCTCAAATTGTAGAAGGGGCGATTCCACTACCAAACGAAACAGGAC
TGGCTGTGGGAGGCATTTTGGAAGCCAATGGAGTGACCTACGTTGTCCTTCCAGGTCCACCAAGTGAATTAAAACCCATG
GTCTTAAACCAACTTCTACCCAAGTTAATGACAGGGAGTAAGCTGTATTCCCGAGTTCTTCGTTTTTTTGGAATTGGCGA
AAGTCAGTTGGTGACCATTTTGGCTGATTTGATTGACAATCAAACCGATCCGACCTTGGCACCTTATGCCAAGACAGGAG
AGGTAACCTTGCGTCTGTCAACAAAGGCTAGCAGTCAAGAAGAGGCGAATCAAGTGCTGGATATTTTGGAAAATCAAATC
TTGGATCGCCAGACCTTTGAAGATCTTTCTTTACGAGACCTTTGTTATGGTTATGGGGAAGAAACTAGTTTAGCCAGCAT
TGTGGTAGAAGAACTGAAAAAACAAGAGAAAACCATCACGGCTGCAGAGAGCTTGACGGCAGGTCTTTTCCAAGCTACCG
TAGCGGATTTTTCTGGTGCTTCCAGTATATTTAAGGGTGGTTTTGTGACCTATAGCTTGGAGGAAAAATCAAACATGTTG
GATATTCCTGTCAAGGATTTGGAAAAGCACGGTGTGGTGTCTGAATTTACAGCTCAGAAGATGGCTGAGCAGGCACGAAA
CAAGACCCAGTCTGATTTTGGCCTTAGTTTGACTGGAGTGGCAGGACCAGATAGCCTAGAAGGGCACCCAGCTGGGACAG
TTTACATAGGATTGGCACAGGAGCAAGGAACTGAGGTTATCAAGGTGAATATTGGAGGCAGAAGTCGAGCAGATGTACGT
CACATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

95.694

100

0.957
  cinA Streptococcus mitis NCTC 12261

95.694

100

0.957
  cinA Streptococcus pneumoniae TIGR4

93.301

100

0.933
  cinA Streptococcus pneumoniae Rx1

93.062

100

0.931
  cinA Streptococcus pneumoniae R6

93.062

100

0.931
  cinA Streptococcus pneumoniae D39

92.823

100

0.928
  cinA Streptococcus mutans UA159

71.77

100

0.718
  cinA Streptococcus suis isolate S10

55.048

99.522

0.548
  cinA Bacillus subtilis subsp. subtilis str. 168

45.933

100

0.459

Multiple sequence alignment