Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   EBO27_RS09155 Genome accession   NZ_CP061034
Coordinates   1959471..1959800 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1954471..1964800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBO27_RS09140 (EBO27_09140) - 1955200..1956144 (+) 945 WP_034072898.1 NAD-dependent epimerase/dehydratase family protein -
  EBO27_RS09145 (EBO27_09145) - 1956245..1957270 (+) 1026 WP_023093916.1 MraY family glycosyltransferase -
  EBO27_RS09150 (EBO27_09150) - 1957283..1959280 (+) 1998 WP_021265047.1 polysaccharide biosynthesis protein -
  EBO27_RS09155 (EBO27_09155) comEA/comE1 1959471..1959800 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  EBO27_RS09165 (EBO27_09165) - 1960017..1961213 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  EBO27_RS09170 (EBO27_09170) uvrB 1961401..1963413 (+) 2013 WP_150035155.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=419656 EBO27_RS09155 WP_003091430.1 1959471..1959800(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA3]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=419656 EBO27_RS09155 WP_003091430.1 1959471..1959800(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA3]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCACGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment