Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GVU25_RS11695 Genome accession   NZ_CP048014
Coordinates   2430543..2432684 (-) Length   713 a.a.
NCBI ID   WP_167846488.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 205     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2425543..2437684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVU25_RS11680 (GVU25_11635) - 2428009..2428854 (-) 846 WP_167846380.1 hypothetical protein -
  GVU25_RS11685 (GVU25_11640) aroB 2428865..2429944 (-) 1080 WP_136143923.1 3-dehydroquinate synthase -
  GVU25_RS13830 (GVU25_11645) aroK 2429963..2430505 (-) 543 WP_004974468.1 shikimate kinase AroK -
  GVU25_RS11695 (GVU25_11650) pilQ 2430543..2432684 (-) 2142 WP_167846488.1 type IV pilus secretin PilQ Machinery gene
  GVU25_RS11700 (GVU25_11655) pilP 2432745..2433269 (-) 525 WP_167846381.1 pilus assembly protein PilP Machinery gene
  GVU25_RS11705 (GVU25_11660) comO 2433269..2433976 (-) 708 WP_004974463.1 type 4a pilus biogenesis protein PilO Machinery gene
  GVU25_RS11710 (GVU25_11665) pilN 2433973..2434608 (-) 636 WP_167846382.1 PilN domain-containing protein Machinery gene
  GVU25_RS11715 (GVU25_11670) pilM 2434608..2435666 (-) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 713 a.a.        Molecular weight: 77008.19 Da        Isoelectric Point: 5.3419

>NTDB_id=419453 GVU25_RS11695 WP_167846488.1 2430543..2432684(-) (pilQ) [Acinetobacter towneri strain 205]
MNNLFRQFSIGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPARLILDFDKAQQTLKQNSV
AVATKEASSVEVSSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSTTATPMAAVTAQRSAQGVSNIGFQRGGEGEGQVV
IDLLGSNTPVDVQQQGSKIVVRTLGNKVPAHLARRLNVNDFATPVSTIDAHNDGSNGVITIQAAGSYEYMAYQAEDKLTI
SLKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKSKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITEGKNASNSRTGSNTNTGTDPLGD
SVGSLLSPRGTVSVDPRTNTLIINDTSAKIDQIRQMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNH
LLVGGSDTTLWNLREPEKNDDLGGWKYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTP
KVLTADKQNAKVASGTQIPYQSSEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMQLNITSDSPGAPTPTGQLTINKN
AVNTNVLVDNGETVVLGGIFEQQTANSQTKVPFLGDIPYIGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2142 bp        

>NTDB_id=419453 GVU25_RS11695 WP_167846488.1 2430543..2432684(-) (pilQ) [Acinetobacter towneri strain 205]
ATGAACAATTTGTTCCGTCAGTTTTCAATAGGCGCAGTCGCAATGGCAGTGATGCAAGTTGCCAATGCCCAAGTCAGCAT
TACCAACATCGTACCCATGCAAATTCCGGGACAGGGCACCGAAATTCGTGTCATGTTTAATGGTTTGCCACCTCAACCTG
CTGCATATCAGCTGGAACAACCTGCGCGTTTGATTCTAGACTTTGATAAAGCGCAACAAACGCTGAAGCAAAACAGCGTT
GCAGTCGCGACCAAAGAAGCCAGCTCTGTAGAGGTAAGCTCAGATGCACAGCGTTCACGTTTAACTGTGAACTTGGCCGA
TGCGGGTGCATTTACCACGCGTGTTGAAGGCAACACCTTTATTTTAAAAATTAACTCAACTACGGCAACGCCTATGGCTG
CCGTGACTGCTCAACGTAGCGCACAAGGCGTATCCAATATTGGTTTCCAGCGTGGCGGTGAAGGCGAAGGTCAGGTGGTG
ATTGATCTACTCGGTAGCAATACGCCTGTAGATGTGCAGCAGCAAGGCAGCAAAATTGTGGTACGTACTTTAGGCAATAA
AGTACCTGCACATTTAGCACGTCGTTTAAATGTAAATGACTTTGCAACACCTGTATCGACCATTGATGCACACAATGATG
GCAGCAATGGCGTGATTACTATTCAAGCTGCAGGCAGCTATGAATATATGGCATATCAGGCAGAAGACAAGCTAACCATC
AGCTTAAAACGCCCTGTCGATAAAAACCCGTTTAAACCACGTGCAGCTCAAAGCTATACAGGCAAAAAGATTTCACTAGA
TTTCCAAGACATCGAAGTGCGTCGTGTATTGCAGTTATTGGCTGATTTCACAGGCATTAACATGGTGGCAGCAGACACCG
TGCAAGGCAACATTACTTTACGCTTAAAAGATGTACCTTGGGATCAGGCGTTAGACATTATCCTGAAATCCAAAAACTTG
GATAAGCGTCGTAATGGTAATGTGATTTGGATTGCACCTGTTTCTGAATTGATTAAAGCCGAAGAAGAAGAAGCCAAAGC
GATTGCGCAAAGCGTGAAACTGGCACCACTTCAAACTGAATATATTCAATTGAATTATGCCAAAGCGGCAGACATTGAAA
AGTTGATTACTGAAGGCAAAAATGCTTCAAATTCACGTACTGGTTCAAATACCAATACAGGTACTGATCCATTAGGCGAT
AGCGTTGGTAGCTTGCTAAGCCCACGCGGGACTGTTTCAGTAGATCCACGGACCAATACCTTAATCATTAACGATACATC
AGCAAAAATTGATCAGATTCGTCAAATGATTGATTTGTTGGATGTGTCTGTGAAGCAAGTGATGATTGAAGCGCGTATTG
TTCGTGCAACCACAGATTTCACCAAGGAAATGGGGGTGAAGTGGGGTATCTTGTCACAAGGGATTACCAATAATAACCAC
TTGTTGGTGGGTGGTAGCGATACGACTTTGTGGAACTTGCGTGAACCAGAAAAAAATGATGATTTAGGTGGTTGGAAGTA
CGAAATTGAACGTCCACAAAACCTGAATGTCGATTTGGGTGTGACCAGTCCTGGTGCTAGCCGTATTGCATTTGGTTTAA
TCAGCTTGTCTGACTTTATGCTCGATTTGGAGTTGTCGGCATTACAAGCAGATGGTTACGGTGAAGTGATTTCGACACCA
AAAGTCCTGACTGCAGATAAGCAAAATGCCAAAGTGGCATCGGGTACGCAAATTCCGTATCAATCTTCTGAAGGTGGTGG
TGTCAATGCCGTATCTACCACAGAATTCATTGATGCGACTTTAAGTTTGGATGTGACCCCAAGTATTACGCCTGACGGTA
AAGTCCAAATGCAATTAAATATCACCAGTGACTCGCCAGGTGCACCTACACCTACAGGTCAGCTCACCATTAATAAGAAC
GCCGTGAATACCAACGTTTTGGTGGATAATGGTGAAACTGTGGTCTTGGGTGGTATTTTTGAGCAACAAACGGCTAACTC
ACAAACCAAAGTTCCATTCTTGGGCGATATTCCTTATATCGGACGTTTATTCCGTAAAGATATCAAGTCGGACAACAAAC
GTGAGTTGCTGATTTTTGTTACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-446)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(547-705)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.381

100

0.776
  pilQ Acinetobacter baumannii strain A118

76.243

100

0.774
  comQ Acinetobacter baylyi ADP1

73.427

100

0.736
  pilQ Pseudomonas aeruginosa PAK

40.228

98.317

0.396
  pilQ Legionella pneumophila strain ERS1305867

37.341

99.158

0.37
  pilQ Legionella pneumophila strain Lp02

37.341

99.158

0.37

Multiple sequence alignment