Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   GVU25_RS11705 Genome accession   NZ_CP048014
Coordinates   2433269..2433976 (-) Length   235 a.a.
NCBI ID   WP_004974463.1    Uniprot ID   A0AB35LWR4
Organism   Acinetobacter towneri strain 205     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2428269..2438976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVU25_RS11685 (GVU25_11640) aroB 2428865..2429944 (-) 1080 WP_136143923.1 3-dehydroquinate synthase -
  GVU25_RS13830 (GVU25_11645) aroK 2429963..2430505 (-) 543 WP_004974468.1 shikimate kinase AroK -
  GVU25_RS11695 (GVU25_11650) pilQ 2430543..2432684 (-) 2142 WP_167846488.1 type IV pilus secretin PilQ Machinery gene
  GVU25_RS11700 (GVU25_11655) pilP 2432745..2433269 (-) 525 WP_167846381.1 pilus assembly protein PilP Machinery gene
  GVU25_RS11705 (GVU25_11660) comO 2433269..2433976 (-) 708 WP_004974463.1 type 4a pilus biogenesis protein PilO Machinery gene
  GVU25_RS11710 (GVU25_11665) pilN 2433973..2434608 (-) 636 WP_167846382.1 PilN domain-containing protein Machinery gene
  GVU25_RS11715 (GVU25_11670) pilM 2434608..2435666 (-) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  GVU25_RS11720 (GVU25_11675) ponA 2435836..2438388 (+) 2553 WP_167846383.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26502.09 Da        Isoelectric Point: 4.8577

>NTDB_id=419455 GVU25_RS11705 WP_004974463.1 2433269..2433976(-) (comO) [Acinetobacter towneri strain 205]
MSLDEFDEVNQDAAVAPKKKMTVEKFFQQFNTLDPNNYGAWPLSVKITCWIFIIFLILALGYFVVIKPKLDAIAAAHTQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFEIVATENKDKKTDIPQVTYKAQAKTYRYVGSADAQTAGNAGGAK

Nucleotide


Download         Length: 708 bp        

>NTDB_id=419455 GVU25_RS11705 WP_004974463.1 2433269..2433976(-) (comO) [Acinetobacter towneri strain 205]
ATGAGTCTCGATGAATTTGATGAAGTAAATCAGGATGCTGCTGTTGCTCCGAAAAAGAAAATGACAGTTGAAAAGTTTTT
TCAACAGTTCAATACCCTAGATCCTAACAATTATGGTGCTTGGCCACTTTCGGTCAAAATTACCTGCTGGATTTTTATTA
TTTTCCTGATTCTAGCTTTAGGTTACTTTGTCGTAATCAAGCCAAAGTTAGATGCCATTGCAGCAGCACATACACAAGAA
CAAAACTTGTTAAATGAGTTCCGTGAAAAAGATTCTAAATTGCGTAATTTGCAGCAATACCAAGCGCAATTACAAGAAAT
GGAAGCGAACTTTAACCAACAACTTGAACAATTGCCAAAAGAAACTGAAATTCCAGGTTTAGTTGAAGATATTAACGTCA
CAGGCGTGAATTCAGGTTTGAAGTTTAAAAACATTCGTTTAGAGAACGAAATTAAACAAGAGTTCTTTATTGAACAGCCA
ATTTCAATTGAAGCGACAGGCGATTATCATGCCTTTGGTTCATTCGTAAGCGGTACAGCAGCATTGCCACGTATTGTGAC
CATGCACGACTTTGAAATTGTGGCGACTGAAAATAAAGACAAGAAAACCGATATTCCGCAAGTGACCTATAAAGCACAAG
CAAAAACTTATCGTTATGTCGGCAGTGCAGATGCACAAACCGCGGGTAATGCTGGAGGAGCGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

72.766

100

0.728
  pilO Acinetobacter baumannii D1279779

71.915

100

0.719

Multiple sequence alignment