Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GWK37_RS17885 Genome accession   NZ_CP048002
Coordinates   3609270..3610520 (+) Length   416 a.a.
NCBI ID   WP_115940774.1    Uniprot ID   -
Organism   Bacillus velezensis strain CACC 316     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3604270..3615520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK37_RS17855 (GWK37_17865) yfmH 3604351..3605637 (+) 1287 WP_007611496.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GWK37_RS17860 (GWK37_17870) ymfI 3605697..3606425 (+) 729 WP_115940775.1 elongation factor P 5-aminopentanone reductase -
  GWK37_RS17865 (GWK37_17875) - 3606501..3606758 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  GWK37_RS17870 (GWK37_17880) - 3606888..3607679 (+) 792 WP_003154149.1 DUF3388 domain-containing protein -
  GWK37_RS17875 (GWK37_17885) - 3607698..3608597 (+) 900 WP_014417801.1 helix-turn-helix domain-containing protein -
  GWK37_RS17880 (GWK37_17890) pgsA 3608671..3609252 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GWK37_RS17885 (GWK37_17895) cinA 3609270..3610520 (+) 1251 WP_115940774.1 competence/damage-inducible protein A Machinery gene
  GWK37_RS17890 (GWK37_17900) recA 3610691..3611734 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  GWK37_RS17895 (GWK37_17905) - 3611902..3613083 (+) 1182 WP_115940773.1 serine hydrolase domain-containing protein -
  GWK37_RS17900 (GWK37_17910) rny 3613376..3614935 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45120.47 Da        Isoelectric Point: 5.3789

>NTDB_id=419267 GWK37_RS17885 WP_115940774.1 3609270..3610520(+) (cinA) [Bacillus velezensis strain CACC 316]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKHVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFVKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=419267 GWK37_RS17885 WP_115940774.1 3609270..3610520(+) (cinA) [Bacillus velezensis strain CACC 316]
ATGGAAATAGCAAAAAAAGCAGAGATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCATGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGGCCGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGTGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAACCCGACGATTG
CGCCGCTCGCTGCTGACGGTGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCTCCGGGACGCGTCT
TTATCGGCATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus suis isolate S10

40.665

93.99

0.382

Multiple sequence alignment