Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GSS61_RS11485 | Genome accession | NZ_CP047985 |
| Coordinates | 2448182..2448586 (+) | Length | 134 a.a. |
| NCBI ID | WP_015297250.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain HZ-52 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2443182..2453586
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSS61_RS11470 (GSS61_11995) | pdhR | 2445215..2445982 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GSS61_RS11475 (GSS61_12000) | ampD | 2446388..2446939 (-) | 552 | WP_005484832.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GSS61_RS11480 (GSS61_12005) | nadC | 2447032..2447919 (+) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GSS61_RS11485 (GSS61_12010) | pilA | 2448182..2448586 (+) | 405 | WP_015297250.1 | pilin | Machinery gene |
| GSS61_RS11490 (GSS61_12015) | pilB | 2448586..2450271 (+) | 1686 | WP_053339791.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GSS61_RS11495 (GSS61_12020) | pilC | 2450295..2451518 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| GSS61_RS11500 (GSS61_12025) | pilD | 2451583..2452452 (+) | 870 | WP_025552578.1 | prepilin peptidase | Machinery gene |
| GSS61_RS11505 (GSS61_12030) | coaE | 2452453..2453067 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13659.55 Da Isoelectric Point: 6.4433
>NTDB_id=419044 GSS61_RS11485 WP_015297250.1 2448182..2448586(+) (pilA) [Vibrio parahaemolyticus strain HZ-52]
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLSGDAITLTKTSSGWTCTDGTTVLDNCN
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLSGDAITLTKTSSGWTCTDGTTVLDNCN
Nucleotide
Download Length: 405 bp
>NTDB_id=419044 GSS61_RS11485 WP_015297250.1 2448182..2448586(+) (pilA) [Vibrio parahaemolyticus strain HZ-52]
ATGAAACACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATCGAATTAATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTGGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCAGGTGTAGTAGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAGTGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
ATGAAACACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATCGAATTAATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTGGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCAGGTGTAGTAGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAGTGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.143 |
100 |
0.545 |
| pilA | Pseudomonas aeruginosa PAK |
42.446 |
100 |
0.44 |
| pilA | Vibrio cholerae strain A1552 |
42.029 |
100 |
0.433 |
| pilA | Vibrio cholerae C6706 |
42.029 |
100 |
0.433 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.029 |
100 |
0.433 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.188 |
95.522 |
0.403 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.535 |
96.269 |
0.381 |