Detailed information NTG0419047

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GSS61_RS11500
• Genome accession: NZ_CP047985
• Coordinates: 2451583..2452452 (+)
• Length: 289 a.a.
• NCBI ID: WP_025552578.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain HZ-52
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2446583..2457452

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSS61_RS11480 (GSS61_12005)	nadC	2447032..2447919 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GSS61_RS11485 (GSS61_12010)	pilA	2448182..2448586 (+)	405	WP_015297250.1	pilin	Machinery gene
GSS61_RS11490 (GSS61_12015)	pilB	2448586..2450271 (+)	1686	WP_053339791.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GSS61_RS11495 (GSS61_12020)	pilC	2450295..2451518 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
GSS61_RS11500 (GSS61_12025)	pilD	2451583..2452452 (+)	870	WP_025552578.1	prepilin peptidase	Machinery gene
GSS61_RS11505 (GSS61_12030)	coaE	2452453..2453067 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
GSS61_RS11510 (GSS61_12035)	zapD	2453095..2453835 (+)	741	WP_005480890.1	cell division protein ZapD	-
GSS61_RS11515 (GSS61_12040)	yacG	2453904..2454098 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
GSS61_RS11520 (GSS61_12045)	rplS	2454456..2454809 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
GSS61_RS11525 (GSS61_12050)	trmD	2454851..2455594 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GSS61_RS11530 (GSS61_12055)	rimM	2455622..2456170 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
GSS61_RS11535 (GSS61_12060)	rpsP	2456199..2456447 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32343.42 Da
• Isoelectric Point: 7.1971

>NTDB_id=419047 GSS61_RS11500 WP_025552578.1 2451583..2452452(+) (pilD) [Vibrio parahaemolyticus strain HZ-52]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=419047 GSS61_RS11500 WP_025552578.1 2451583..2452452(+) (pilD) [Vibrio parahaemolyticus strain HZ-52]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45