Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GWK42_RS08275 Genome accession   NZ_CP047972
Coordinates   1628298..1629569 (-) Length   423 a.a.
NCBI ID   WP_170085611.1    Uniprot ID   A0A6F9E7N2
Organism   Kyrpidia spormannii strain COOX1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1623298..1634569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK42_RS08255 rny 1623300..1624829 (-) 1530 WP_100669318.1 ribonuclease Y -
  GWK42_RS08260 - 1625008..1625493 (-) 486 WP_170085609.1 RecX family transcriptional regulator -
  GWK42_RS08265 recA 1625486..1626541 (-) 1056 WP_170085610.1 recombinase RecA Machinery gene
  GWK42_RS08270 - 1626713..1628293 (-) 1581 WP_100667740.1 DEAD/DEAH box helicase -
  GWK42_RS08275 cinA 1628298..1629569 (-) 1272 WP_170085611.1 competence/damage-inducible protein A Machinery gene
  GWK42_RS08280 pgsA 1629614..1630195 (-) 582 WP_170085612.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GWK42_RS08285 rimO 1630196..1631524 (-) 1329 WP_170085613.1 30S ribosomal protein S12 methylthiotransferase RimO -
  GWK42_RS08290 - 1631613..1632104 (-) 492 WP_100669320.1 YajQ family cyclic di-GMP-binding protein -
  GWK42_RS08295 - 1632256..1632852 (-) 597 WP_170085614.1 YhcN/YlaJ family sporulation lipoprotein -
  GWK42_RS08300 - 1632933..1633724 (-) 792 WP_170085615.1 helix-turn-helix domain-containing protein -
  GWK42_RS08305 - 1633750..1634514 (-) 765 WP_100667746.1 DUF3388 domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45699.30 Da        Isoelectric Point: 6.0271

>NTDB_id=418879 GWK42_RS08275 WP_170085611.1 1628298..1629569(-) (cinA) [Kyrpidia spormannii strain COOX1]
MKAEIIAVGTELLLGQIANTNARFVSEQLALAGVGVYFHTVVGDNRGRLLSVLQTARQRSDLVILCGGLGPTEDDLTRET
VAEFLGRPLELHPEALRAVEGYFSGLGRDMPENNRRQAMVIQGGNMIPNPRGTAPGQYVEAEGRRYVLLPGPPTELEPMV
RESVIPLVQTWMGGNETIRSRVLRLYGIGESHLAERIADLLAAPDNPTLAPLAAEGEVTLRLTARAASEKEAWERIAPLE
AELRRRLGRYIYGVDEETLEVAVGRVLQARGMTVATAESCTGGLLGEMITNVPGSSRYFVGGVISYSNDVKKAVLGVSGE
ILERLGAVSEPVAIQMAQGVAEHLGADWGIGITGIAGPDGGTETKPVGLVYIAVHHRNADSWVKEFRFRGDRRQVRIRAA
KAALFALWRKLGAMDEGLSPAER

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=418879 GWK42_RS08275 WP_170085611.1 1628298..1629569(-) (cinA) [Kyrpidia spormannii strain COOX1]
ATGAAGGCGGAAATCATCGCTGTGGGTACGGAACTCTTGCTGGGGCAGATTGCCAACACCAACGCCCGGTTCGTTTCGGA
ACAATTGGCTCTGGCGGGGGTTGGGGTATACTTCCATACAGTGGTGGGGGATAACCGAGGCAGGCTGTTGAGTGTGTTAC
AGACGGCCCGGCAGCGATCCGACCTCGTGATCTTGTGTGGCGGGTTGGGGCCGACCGAGGACGACTTGACCCGGGAGACG
GTGGCGGAGTTTCTCGGGCGGCCTTTAGAGCTTCACCCGGAAGCGCTTCGTGCGGTGGAAGGGTATTTTTCTGGGTTGGG
CCGGGACATGCCGGAAAACAATCGCCGCCAGGCCATGGTCATTCAGGGCGGGAACATGATTCCCAATCCCCGGGGAACGG
CGCCGGGACAGTATGTGGAGGCGGAGGGGCGGCGGTACGTCCTTTTACCCGGCCCCCCCACGGAGTTAGAACCCATGGTC
AGGGAATCGGTGATTCCGTTGGTGCAAACCTGGATGGGCGGGAACGAAACCATTCGTTCCCGGGTGCTTCGCCTTTACGG
GATCGGCGAATCACACCTGGCGGAACGGATCGCCGATTTGTTGGCCGCCCCAGATAACCCGACGCTGGCCCCTTTGGCCG
CCGAAGGGGAGGTCACTCTCCGGTTAACCGCCCGGGCTGCCTCGGAAAAAGAGGCGTGGGAGCGGATCGCGCCGCTGGAG
GCAGAGCTGCGCCGGCGCTTGGGGCGATATATCTACGGCGTCGACGAGGAAACCCTGGAGGTGGCCGTGGGGCGAGTTTT
ACAAGCCCGAGGAATGACCGTTGCCACCGCCGAGAGCTGCACCGGCGGGCTCCTGGGAGAGATGATCACCAACGTTCCTG
GGAGTTCCCGGTATTTTGTCGGCGGAGTGATATCGTATAGCAATGATGTGAAGAAAGCGGTTCTGGGCGTTTCCGGGGAG
ATCCTGGAACGGCTCGGAGCGGTGAGCGAACCGGTGGCCATCCAGATGGCTCAGGGAGTCGCCGAGCATCTCGGAGCGGA
CTGGGGAATTGGAATTACCGGGATCGCTGGGCCGGACGGCGGTACGGAGACAAAACCGGTGGGTTTGGTGTATATCGCAG
TCCATCATCGGAATGCGGATTCTTGGGTAAAAGAATTTCGATTTCGTGGAGACCGCCGCCAAGTGCGCATTCGGGCCGCC
AAAGCGGCACTGTTCGCCCTGTGGCGAAAACTCGGGGCGATGGATGAAGGGTTAAGTCCTGCAGAAAGGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F9E7N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.244

96.927

0.487
  cinA Streptococcus pneumoniae TIGR4

45.39

100

0.454
  cinA Streptococcus pneumoniae R6

45.154

100

0.452
  cinA Streptococcus pneumoniae Rx1

45.154

100

0.452
  cinA Streptococcus pneumoniae D39

44.917

100

0.449
  cinA Streptococcus mitis SK321

43.897

100

0.442
  cinA Streptococcus mitis NCTC 12261

43.897

100

0.442
  cinA Streptococcus mutans UA159

43.405

98.582

0.428
  cinA Streptococcus suis isolate S10

42.063

89.362

0.376

Multiple sequence alignment