Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | SynA1562_RS01090 | Genome accession | NZ_CP047950 |
| Coordinates | 227504..227710 (-) | Length | 68 a.a. |
| NCBI ID | WP_370593228.1 | Uniprot ID | A0A7G8GZ53 |
| Organism | Synechococcus sp. A15-62 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 222504..232710
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SynA1562_RS01070 (SynA1562_00228) | - | 223479..224972 (-) | 1494 | WP_186494395.1 | tol-pal system YbgF family protein | - |
| SynA1562_RS01075 (SynA1562_00229) | folK | 224971..225468 (+) | 498 | WP_186494397.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| SynA1562_RS01080 (SynA1562_00230) | - | 225487..226047 (+) | 561 | WP_186494399.1 | NUDIX hydrolase | - |
| SynA1562_RS01085 (SynA1562_00231) | - | 226047..227480 (+) | 1434 | WP_186494400.1 | FAD-binding domain-containing protein | - |
| SynA1562_RS01090 (SynA1562_00232) | pilC | 227504..227710 (-) | 207 | WP_370593228.1 | type II secretion system F family protein | Machinery gene |
| SynA1562_RS01095 (SynA1562_00233) | - | 227758..228993 (-) | 1236 | WP_186494402.1 | DegT/DnrJ/EryC1/StrS aminotransferase family protein | - |
| SynA1562_RS01100 (SynA1562_00234) | - | 229004..229597 (-) | 594 | WP_186494404.1 | thioredoxin family protein | - |
| SynA1562_RS01105 (SynA1562_00235) | - | 229655..230176 (+) | 522 | WP_186494406.1 | hypothetical protein | - |
| SynA1562_RS01110 (SynA1562_00236) | - | 230158..230598 (-) | 441 | WP_186494407.1 | hypothetical protein | - |
| SynA1562_RS01115 (SynA1562_00237) | - | 230614..231525 (-) | 912 | WP_186494409.1 | FAD-binding domain-containing protein | - |
| SynA1562_RS01120 (SynA1562_00238) | fabI | 231609..232391 (+) | 783 | WP_186495246.1 | enoyl-ACP reductase FabI | - |
Sequence
Protein
Download Length: 68 a.a. Molecular weight: 7734.18 Da Isoelectric Point: 3.7179
>NTDB_id=418680 SynA1562_RS01090 WP_370593228.1 227504..227710(-) (pilC) [Synechococcus sp. A15-62]
MFRIGEETGELSEMVNKLADFYEDEVSESVKALTSIMEPLMIVFVAGVVAVMLIAMYLPMFFMFETIQ
MFRIGEETGELSEMVNKLADFYEDEVSESVKALTSIMEPLMIVFVAGVVAVMLIAMYLPMFFMFETIQ
Nucleotide
Download Length: 207 bp
>NTDB_id=418680 SynA1562_RS01090 WP_370593228.1 227504..227710(-) (pilC) [Synechococcus sp. A15-62]
ATGTTCCGAATTGGCGAGGAAACAGGGGAGCTCAGCGAAATGGTGAACAAATTGGCTGATTTTTACGAAGACGAGGTTTC
CGAAAGTGTTAAAGCTCTCACATCAATTATGGAGCCGCTGATGATCGTCTTTGTTGCAGGAGTTGTTGCCGTCATGCTCA
TCGCGATGTATCTCCCGATGTTCTTTATGTTTGAAACGATCCAATAA
ATGTTCCGAATTGGCGAGGAAACAGGGGAGCTCAGCGAAATGGTGAACAAATTGGCTGATTTTTACGAAGACGAGGTTTC
CGAAAGTGTTAAAGCTCTCACATCAATTATGGAGCCGCTGATGATCGTCTTTGTTGCAGGAGTTGTTGCCGTCATGCTCA
TCGCGATGTATCTCCCGATGTTCTTTATGTTTGAAACGATCCAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
49.254 |
98.529 |
0.485 |
| pilC | Acinetobacter baylyi ADP1 |
50.794 |
92.647 |
0.471 |
| pilC | Pseudomonas stutzeri DSM 10701 |
50.794 |
92.647 |
0.471 |
| pilG | Neisseria gonorrhoeae MS11 |
52.459 |
89.706 |
0.471 |
| pilC | Vibrio cholerae strain A1552 |
52.459 |
89.706 |
0.471 |
| pilC | Vibrio campbellii strain DS40M4 |
52.459 |
89.706 |
0.471 |
| pilG | Neisseria meningitidis 44/76-A |
50.82 |
89.706 |
0.456 |
| pilC | Acinetobacter baumannii D1279779 |
49.206 |
92.647 |
0.456 |
| pilC | Legionella pneumophila strain ERS1305867 |
47.541 |
89.706 |
0.426 |