Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SALIVB_RS00395 Genome accession   NC_015760
Coordinates   65042..66307 (+) Length   421 a.a.
NCBI ID   WP_013989917.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 60042..71307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS00365 (SALIVB_0071) - 60372..60809 (-) 438 WP_013989911.1 LytTR family DNA-binding domain-containing protein -
  SALIVB_RS00370 (SALIVB_0072) - 60988..61293 (+) 306 WP_013989912.1 hypothetical protein -
  SALIVB_RS00375 (SALIVB_0073) mutL 61345..63282 (+) 1938 WP_013989913.1 DNA mismatch repair endonuclease MutL -
  SALIVB_RS00380 (SALIVB_0074) - 63413..63634 (+) 222 WP_013989914.1 hypothetical protein -
  SALIVB_RS00385 (SALIVB_0075) ruvA 63792..64382 (+) 591 WP_013989915.1 Holliday junction branch migration protein RuvA -
  SALIVB_RS00390 (SALIVB_0076) - 64391..64945 (+) 555 WP_013989916.1 DNA-3-methyladenine glycosylase I -
  SALIVB_RS00395 (SALIVB_0077) cinA 65042..66307 (+) 1266 WP_013989917.1 competence/damage-inducible protein A Machinery gene
  SALIVB_RS00400 (SALIVB_0078) recA 66348..67487 (+) 1140 WP_013989918.1 recombinase RecA Machinery gene
  SALIVB_RS00405 (SALIVB_0079) spx 67656..68054 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45632.79 Da        Isoelectric Point: 5.5081

>NTDB_id=41791 SALIVB_RS00395 WP_013989917.1 65042..66307(+) (cinA) [Streptococcus salivarius CCHSS3]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLEQASKRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGVITTQGVTYVVLPGPPSELKPM
VNQELVPALTENHASLYSRVLRFFGVGESQLVTILKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSREEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFETFRLLKNHGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKSKM
LDIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQETT

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=41791 SALIVB_RS00395 WP_013989917.1 65042..66307(+) (cinA) [Streptococcus salivarius CCHSS3]
ATGAAAGCTGAATTGATTGCAGTAGGAACCGAAATCCTAACCGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAATTAGGAATCGATGTGTATTTTCACACAGCAGTAGGAGACAATGAAAACCGCCTACTCTCAGTTCTAG
AACAAGCTAGTAAACGTAGTGATTTAGTCATACTTTGTGGAGGACTTGGTCCTACTGAGGATGACTTAACCAAGCAAACA
CTGGCTAAGTTTTTAGGCAAAGAACTCGTTTTTGATGAAGAGGCAAGTAAAAAATTGGACAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCGCAAATTGTTGAGGGGGCTATCCCCTTGCAAAATCCTACAGGTC
TTGCAGTTGGAGGTGTCATTACTACTCAAGGAGTGACCTATGTAGTCCTACCTGGGCCACCAAGTGAACTTAAACCTATG
GTGAATCAGGAACTTGTTCCAGCACTTACTGAGAATCACGCAAGTCTTTATTCGAGAGTCCTAAGATTCTTTGGCGTTGG
AGAAAGTCAATTGGTGACTATTCTGAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACAAAGGCTTCTTCACGAGAAGAAGCGGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCTACTAAAACTCTAGATGGTAAATCCTTATCTGATTTTATTTATGGGTATGGAGAGTCTAATAGTTTAGCCTT
TGAAACTTTCCGTTTGCTTAAGAACCATGGCAAGACTATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGAGCCTCACAAGTGTTTAAAGGCGGCTTTGTTACTTACAGCATTGAAGAAAAATCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCCCG
AGCTAAAACAGATAGCGATTACGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CAGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAGACAACTTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Competence-damaged protein (CinA)

(264-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

75.179

99.525

0.748
  cinA Streptococcus mitis NCTC 12261

74.463

99.525

0.741
  cinA Streptococcus pneumoniae TIGR4

73.986

99.525

0.736
  cinA Streptococcus pneumoniae Rx1

73.747

99.525

0.734
  cinA Streptococcus pneumoniae R6

73.747

99.525

0.734
  cinA Streptococcus pneumoniae D39

73.508

99.525

0.732
  cinA Streptococcus mutans UA159

71.223

99.05

0.705
  cinA Streptococcus suis isolate S10

55.529

98.812

0.549
  cinA Bacillus subtilis subsp. subtilis str. 168

45.131

100

0.451

Multiple sequence alignment