Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E3S90_RS13495 Genome accession   NZ_CP047790
Coordinates   2740153..2740608 (+) Length   151 a.a.
NCBI ID   WP_039702429.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_830     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2728023..2747321 2740153..2740608 within 0


Gene organization within MGE regions


Location: 2728023..2747321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S90_RS13390 (E3S90_13390) lukH 2728023..2729075 (+) 1053 WP_000791419.1 bi-component leukocidin LukGH subunit H -
  E3S90_RS13395 (E3S90_13395) lukG 2729097..2730113 (+) 1017 WP_000595326.1 bi-component leukocidin LukGH subunit G -
  E3S90_RS13400 (E3S90_13400) sph 2730351..2731175 (-) 825 Protein_2610 sphingomyelin phosphodiesterase -
  E3S90_RS13405 (E3S90_13405) - 2731232..2732269 (-) 1038 WP_000857191.1 tyrosine-type recombinase/integrase -
  E3S90_RS13410 (E3S90_13410) - 2732328..2732792 (-) 465 WP_000825947.1 hypothetical protein -
  E3S90_RS13415 (E3S90_13415) - 2732892..2733074 (-) 183 WP_000705248.1 hypothetical protein -
  E3S90_RS13420 (E3S90_13420) - 2733119..2733976 (-) 858 WP_000804507.1 HIRAN domain-containing protein -
  E3S90_RS13425 (E3S90_13425) - 2733988..2734704 (-) 717 WP_001083967.1 LexA family transcriptional regulator -
  E3S90_RS13430 (E3S90_13430) - 2734868..2735110 (+) 243 WP_000639927.1 DUF739 family protein -
  E3S90_RS13435 (E3S90_13435) - 2735124..2735384 (+) 261 WP_000435341.1 transcriptional regulator -
  E3S90_RS13440 (E3S90_13440) - 2735408..2735947 (-) 540 WP_000351243.1 hypothetical protein -
  E3S90_RS13445 (E3S90_13445) - 2736004..2736759 (+) 756 WP_001148341.1 phage antirepressor KilAC domain-containing protein -
  E3S90_RS13450 (E3S90_13450) - 2736775..2736972 (+) 198 WP_001148861.1 hypothetical protein -
  E3S90_RS13455 (E3S90_13455) - 2737003..2737143 (+) 141 WP_000939496.1 hypothetical protein -
  E3S90_RS13460 (E3S90_13460) - 2737158..2737790 (-) 633 WP_000275058.1 hypothetical protein -
  E3S90_RS13465 (E3S90_13465) - 2737845..2738165 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  E3S90_RS13470 (E3S90_13470) - 2738162..2738323 (+) 162 WP_000066023.1 DUF1270 family protein -
  E3S90_RS13475 (E3S90_13475) - 2738413..2738715 (+) 303 WP_000165366.1 DUF2482 family protein -
  E3S90_RS13480 (E3S90_13480) - 2738720..2738980 (+) 261 WP_039702428.1 DUF1108 family protein -
  E3S90_RS13485 (E3S90_13485) - 2738993..2739529 (+) 537 WP_001004336.1 host-nuclease inhibitor Gam family protein -
  E3S90_RS13490 (E3S90_13490) - 2739530..2740153 (+) 624 WP_000139720.1 DUF1071 domain-containing protein -
  E3S90_RS13495 (E3S90_13495) ssbA 2740153..2740608 (+) 456 WP_039702429.1 single-stranded DNA-binding protein Machinery gene
  E3S90_RS13500 (E3S90_13500) - 2740620..2741294 (+) 675 WP_039702430.1 putative HNHc nuclease -
  E3S90_RS13505 (E3S90_13505) - 2741287..2742030 (+) 744 WP_039702431.1 hypothetical protein -
  E3S90_RS13510 (E3S90_13510) - 2742040..2742819 (+) 780 WP_039702432.1 ATP-binding protein -
  E3S90_RS13515 (E3S90_13515) - 2742813..2742971 (+) 159 WP_000256594.1 hypothetical protein -
  E3S90_RS13520 (E3S90_13520) - 2742984..2743205 (+) 222 WP_039702433.1 DUF3269 family protein -
  E3S90_RS13525 (E3S90_13525) - 2743215..2743622 (+) 408 WP_000401953.1 RusA family crossover junction endodeoxyribonuclease -
  E3S90_RS13530 (E3S90_13530) - 2743622..2743807 (+) 186 WP_039702434.1 DUF3113 family protein -
  E3S90_RS13535 (E3S90_13535) - 2743808..2744167 (+) 360 WP_039702435.1 SA1788 family PVL leukocidin-associated protein -
  E3S90_RS13540 (E3S90_13540) - 2744167..2744421 (+) 255 WP_000022722.1 DUF3310 domain-containing protein -
  E3S90_RS13545 (E3S90_13545) - 2744421..2744669 (+) 249 WP_171817006.1 SAV1978 family virulence-associated passenger protein -
  E3S90_RS13550 (E3S90_13550) - 2744684..2745085 (+) 402 WP_039702437.1 hypothetical protein -
  E3S90_RS13555 (E3S90_13555) - 2745082..2745498 (+) 417 WP_000982697.1 YopX family protein -
  E3S90_RS13560 (E3S90_13560) - 2745552..2745779 (+) 228 Protein_2642 hypothetical protein -
  E3S90_RS13565 (E3S90_13565) - 2745772..2746026 (+) 255 WP_039702439.1 DUF1024 family protein -
  E3S90_RS13570 (E3S90_13570) - 2746146..2746346 (+) 201 WP_000265042.1 DUF1514 family protein -
  E3S90_RS13575 (E3S90_13575) - 2746374..2746790 (+) 417 WP_000590122.1 hypothetical protein -
  E3S90_RS13580 (E3S90_13580) - 2747022..2747321 (+) 300 WP_000988330.1 HNH endonuclease -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16930.66 Da        Isoelectric Point: 8.4121

>NTDB_id=416315 E3S90_RS13495 WP_039702429.1 2740153..2740608(+) (ssbA) [Staphylococcus aureus strain UP_830]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYQQQNNSYNAPQNRQQNNPFANANGPIDINDDDLPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=416315 E3S90_RS13495 WP_039702429.1 2740153..2740608(+) (ssbA) [Staphylococcus aureus strain UP_830]
ATGTTAAACAGAACAGTATTAGTAGGGCGATTAACAAAAGACCCAGAATTAAGAAGCACACCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTGAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGACTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTATCTTTCTAAAGGATCACTGGCAGGTGTAGACGGACGATTACAAACAAGA
AGCTACGAAAACAAAGTCGGGCAACGTGTATTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCAAAGAA
TAACAACCAACAACCAAACAACAATTATCAACAACAGAACAATTCATATAACGCACCACAGAATAGACAACAAAACAATC
CGTTCGCAAATGCTAATGGTCCAATAGACATTAATGATGATGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.791

100

0.715
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.589
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

70.199

0.417
  ssb Glaesserella parasuis strain SC1401

34.078

100

0.404
  ssb Neisseria gonorrhoeae MS11

33.721

100

0.384
  ssb Neisseria meningitidis MC58

33.721

100

0.384
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.826

76.159

0.364

Multiple sequence alignment