Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   E3T04_RS13190 Genome accession   NZ_CP047782
Coordinates   2615268..2616896 (-) Length   542 a.a.
NCBI ID   WP_001186594.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1352     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2610268..2621896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T04_RS13170 (E3T04_13170) - 2613296..2613517 (-) 222 WP_001015148.1 hypothetical protein -
  E3T04_RS13175 (E3T04_13175) - 2613532..2614035 (-) 504 WP_000849084.1 DUF1643 domain-containing protein -
  E3T04_RS13180 (E3T04_13180) - 2614051..2614365 (-) 315 WP_000703986.1 DUF960 family protein -
  E3T04_RS13185 (E3T04_13185) - 2614452..2614802 (-) 351 WP_000859154.1 SAUGI family uracil-DNA glycosylase inhibitor -
  E3T04_RS13190 (E3T04_13190) ccrB 2615268..2616896 (-) 1629 WP_001186594.1 cassette chromosome recombinase CcrB Machinery gene
  E3T04_RS13195 (E3T04_13195) ccrA 2616917..2618266 (-) 1350 WP_000806249.1 cassette chromosome recombinase CcrA Machinery gene
  E3T04_RS13200 (E3T04_13200) - 2618457..2618735 (-) 279 WP_001100996.1 hypothetical protein -
  E3T04_RS13205 (E3T04_13205) cch1 2618806..2620593 (-) 1788 WP_000002699.1 cassette chromosome replicative helicase -
  E3T04_RS13210 (E3T04_13210) - 2620593..2620862 (-) 270 WP_000875688.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62549.40 Da        Isoelectric Point: 9.5281

>NTDB_id=415986 E3T04_RS13190 WP_001186594.1 2615268..2616896(-) (ccrB) [Staphylococcus aureus strain UP_1352]
MQQLKQKRIGIYVRVSTEIQSTEGYSINGQINQIREYCDFNNFVVVDVYADRGISGKSMNRPELQRLLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIIKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSEKPQVHGKGTNLLTGIIRCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRAEVIEKYVMDQIFEIVKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLIDIANQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIERIDIRKDENHKKQFYVTLKLNNEIIKQLFNDTPLNEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=415986 E3T04_RS13190 WP_001186594.1 2615268..2616896(-) (ccrB) [Staphylococcus aureus strain UP_1352]
ATGCAACAACTCAAACAAAAACGTATCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CAATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCGGATAGAGGTA
TTTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTATTAAAAGATGCGAACGAAGGTCATATCGATTGTGTCATG
GTGTATAAAACGAATAGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGCTACAAATACTTGCAAGCTTTTCTG
AATTTGAACGCAATAACATTGTCGAGAACGTATTCATGGGACAAACCCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTAGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAATCAACATGAAGCTAATATCATCAAATA
TATCTTTGAGTCATATGCTAAAGGCCACGGATATCGTAAAATGGCTAATGCACTTAATCATAAAGGTTATGTAACAAAGA
AAGGTAATCCATTCAGTACATCAGCTATTGCTTATATCCTTTCCAATCCCTTTTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGACGTAAAGGCCTTAATGATAATCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAACAAGTAAGTGAAAAACCACAAGTGCATGGTAAAGGAACCA
ATCTATTAACGGGTATTATTCGCTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACTACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAATTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGTGT
TAGAGCTGAGGTGATTGAGAAATACGTTATGGATCAAATATTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCATTGACATTGCAAATCAAATGAATCAACTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTATACCTAACGGTTATTGAACGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAA
ACTTAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCAACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-281)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

83.21

100

0.832

Multiple sequence alignment