Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   E3T04_RS13195 Genome accession   NZ_CP047782
Coordinates   2616917..2618266 (-) Length   449 a.a.
NCBI ID   WP_000806249.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1352     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2611917..2623266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T04_RS13170 (E3T04_13170) - 2613296..2613517 (-) 222 WP_001015148.1 hypothetical protein -
  E3T04_RS13175 (E3T04_13175) - 2613532..2614035 (-) 504 WP_000849084.1 DUF1643 domain-containing protein -
  E3T04_RS13180 (E3T04_13180) - 2614051..2614365 (-) 315 WP_000703986.1 DUF960 family protein -
  E3T04_RS13185 (E3T04_13185) - 2614452..2614802 (-) 351 WP_000859154.1 SAUGI family uracil-DNA glycosylase inhibitor -
  E3T04_RS13190 (E3T04_13190) ccrB 2615268..2616896 (-) 1629 WP_001186594.1 cassette chromosome recombinase CcrB Machinery gene
  E3T04_RS13195 (E3T04_13195) ccrA 2616917..2618266 (-) 1350 WP_000806249.1 cassette chromosome recombinase CcrA Machinery gene
  E3T04_RS13200 (E3T04_13200) - 2618457..2618735 (-) 279 WP_001100996.1 hypothetical protein -
  E3T04_RS13205 (E3T04_13205) cch1 2618806..2620593 (-) 1788 WP_000002699.1 cassette chromosome replicative helicase -
  E3T04_RS13210 (E3T04_13210) - 2620593..2620862 (-) 270 WP_000875688.1 hypothetical protein -
  E3T04_RS13215 (E3T04_13215) - 2621017..2622576 (-) 1560 WP_000172880.1 hypothetical protein -
  E3T04_RS14895 - 2622613..2622855 (-) 243 WP_142392942.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52276.93 Da        Isoelectric Point: 10.0235

>NTDB_id=415987 E3T04_RS13195 WP_000806249.1 2616917..2618266(-) (ccrA) [Staphylococcus aureus strain UP_1352]
MKQAIGYLRQSTTKQQSLVAQKQAIKTLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKAIFHYYLQDYGYKKIAQYLETDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSTSI
YEQAQAIRSQKHTKRTPSSNQLKQKIKCPCCGSTLTNMTIRKKNHTLRYYVCPQNLNASRFVCEFKGINAQALEASVLST
CQDFFQNQQLYSKINRTIQQQLKRQRDIETKTTLNHEQLIEKLANGKIDAETFREQTQSLHQQSKPISSISAYQIQRAFQ
NIIQQRFTLNMLYPYIDQIHITKKKMLVGIYFKNEPLNIVNQKTQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=415987 E3T04_RS13195 WP_000806249.1 2616917..2618266(-) (ccrA) [Staphylococcus aureus strain UP_1352]
ATGAAACAAGCAATAGGTTACTTACGTCAGAGCACTACAAAGCAACAATCACTAGTAGCACAGAAACAAGCCATCAAGAC
ATTAGCTGAAAAACACAATATTCAACACATCACATTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAAGGACAATGTGACGTACTATGTTGTTATCGCTTGAATCGACTACATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAATATCATGTTCATATTCTAAGTATTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAGCTCAATATATTCATAAGCCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAAAATGGCCTTCGAGAAAAAGCAAAACAAGGTAAACTGATCACAACCCATGCACCATTTGGTTATACCTATCGC
AATGGCACATTCACAATTAATCAAGATGAAGCACCAACAGTTAAGGCAATATTCCATTACTACCTACAAGACTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAACAGATGATAAATGTATTAATCGTAAACCTTACCAAGTACGCGCTATTATAACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTCCCATCTATTGTTTCGACCAGTATA
TACGAACAAGCTCAAGCAATAAGGTCACAAAAACATACCAAGCGGACTCCATCATCTAATCAACTCAAACAAAAAATCAA
ATGTCCGTGTTGTGGCTCAACACTCACAAATATGACAATTAGAAAAAAGAACCATACATTACGTTATTACGTCTGTCCTC
AAAATTTGAATGCATCTCGTTTTGTCTGTGAATTCAAGGGAATCAACGCACAAGCATTAGAAGCAAGTGTCTTATCTACA
TGTCAGGATTTCTTTCAGAACCAACAGCTGTATTCAAAAATTAACCGAACAATTCAACAACAACTCAAAAGACAAAGAGA
CATAGAAACTAAAACTACACTCAATCACGAACAGCTGATAGAAAAATTGGCCAACGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATCAAATTCAAAGAGCGTTTCAA
AACATCATTCAACAACGTTTCACGCTAAACATGTTATACCCTTATATTGATCAAATTCATATCACAAAAAAGAAAATGCT
TGTTGGCATTTATTTCAAAAATGAACCCTTAAATATCGTCAATCAAAAAACGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Recombinase (Recombinase)

(169-250)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

86.414

100

0.864
  ccrA Staphylococcus aureus N315

76.837

100

0.768

Multiple sequence alignment