Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Ami3637_RS00010 Genome accession   NZ_CP047591
Coordinates   1089..2849 (-) Length   586 a.a.
NCBI ID   WP_162360753.1    Uniprot ID   A0A6P1MIU0
Organism   Aminipila terrae strain CBA3637     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..7849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ami3637_RS00010 (Ami3637_00010) rcrP 1089..2849 (-) 1761 WP_162360753.1 ABC transporter ATP-binding protein Regulator
  Ami3637_RS00015 (Ami3637_00015) - 2959..3393 (-) 435 WP_162360754.1 MarR family winged helix-turn-helix transcriptional regulator -
  Ami3637_RS18050 - 3482..3901 (-) 420 WP_330586952.1 hypothetical protein -
  Ami3637_RS00020 (Ami3637_00020) ligD 3859..5921 (-) 2063 Protein_4 DNA ligase D -
  Ami3637_RS00025 (Ami3637_00025) - 5927..6700 (-) 774 WP_162360755.1 Ku protein -
  Ami3637_RS00030 (Ami3637_00030) - 6777..7304 (-) 528 WP_162360756.1 putative immunity protein -
  Ami3637_RS00035 (Ami3637_00035) - 7460..7810 (-) 351 WP_162360757.1 tRNA-binding protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65057.01 Da        Isoelectric Point: 5.7261

>NTDB_id=414364 Ami3637_RS00010 WP_162360753.1 1089..2849(-) (rcrP) [Aminipila terrae strain CBA3637]
MLKIFKYLKFKEWVQAAISLVFIVIQVWLDLKLPDYMSDITRLVQTPGSAMSDIWEQGFYMLLCALGSVISAVIVGFFAA
RIAASFSQRLRSMLFYKVDSFSMEEINRFSTSSLITRSTNDITQIQMLVTMGLQMIVKAPILSVWALTKIAGKGMEWSLA
TGVAVLIMIVIIAFIMIFVLPKFRKMQTLTDNLNQVTRENLTGLRVVRAYNAEAYQEEKFEKANEELTKTQLFTSRGMAV
MMPMMSMIMSGLSLAIYWIGAYLIQDAQAMDKLPIFSNMVVFSAYAVQVIMSFMMLVMLFILMPRATVSAKRINEVLDTK
PTIISGTLTEGKTGLVGEVEFKNVSFKYPDAAEYVLQDVSFSVKKGETVAFIGSTGSGKSTLINLVPRFFDATEGQVLID
GVNVKDYDTEALYNKIGYVPQKAVLFRGSVSSNVAYGENGKETVSEEQVRKAVAIAQGTDFVEAMDSGYYADISQGGTNV
SGGQKQRLAIARAVCRDPEIYIFDDSFSALDYKTDRVLRSALKKETAGITSLIVAQRIGTIMDADQIIVLDEGRMVGKGT
HKELLATCQVYKEIAMSQLSEEELVS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=414364 Ami3637_RS00010 WP_162360753.1 1089..2849(-) (rcrP) [Aminipila terrae strain CBA3637]
ATGCTTAAAATTTTCAAGTATCTTAAATTTAAAGAATGGGTCCAGGCTGCTATCAGTCTTGTATTTATTGTTATACAGGT
CTGGCTGGATTTAAAGCTGCCTGACTATATGTCTGATATAACCCGGCTGGTGCAGACTCCCGGCAGTGCCATGAGCGATA
TATGGGAACAAGGGTTCTACATGCTGCTTTGTGCCCTGGGAAGTGTGATTTCAGCAGTTATAGTCGGATTTTTCGCTGCT
CGCATTGCCGCTTCATTTTCTCAACGGCTGCGTAGCATGCTGTTTTATAAGGTGGATTCTTTCTCCATGGAAGAAATCAA
CCGGTTTTCTACATCCAGCCTGATTACACGTTCCACCAATGATATCACTCAGATTCAAATGCTAGTTACCATGGGATTGC
AAATGATTGTAAAAGCACCTATTCTGTCCGTCTGGGCGCTTACAAAAATTGCAGGAAAAGGCATGGAATGGTCGCTGGCT
ACAGGAGTAGCAGTACTTATTATGATTGTTATAATAGCTTTTATCATGATTTTTGTTCTGCCAAAATTCAGAAAGATGCA
GACTCTTACCGACAATCTGAACCAGGTAACCAGAGAGAATCTGACAGGTCTGCGTGTAGTACGTGCCTATAATGCAGAAG
CTTATCAGGAAGAAAAATTTGAGAAGGCTAATGAAGAACTGACCAAGACACAGCTTTTCACAAGTCGTGGTATGGCGGTT
ATGATGCCAATGATGAGTATGATTATGAGTGGGCTTTCTCTGGCAATCTACTGGATTGGCGCATACCTGATTCAGGATGC
TCAGGCAATGGACAAACTACCTATTTTTTCAAATATGGTCGTATTTTCTGCTTATGCAGTGCAGGTAATTATGTCTTTCA
TGATGCTTGTTATGCTTTTTATACTGATGCCAAGGGCTACCGTATCGGCTAAACGTATTAATGAAGTGCTGGATACAAAG
CCCACCATTATTAGTGGGACACTGACAGAAGGAAAAACGGGGCTTGTAGGTGAAGTAGAATTTAAAAATGTCAGCTTTAA
ATATCCTGATGCCGCTGAATATGTGTTACAGGATGTGAGCTTTTCTGTAAAAAAAGGAGAAACCGTAGCATTTATTGGAT
CTACAGGCAGTGGCAAGAGTACCTTAATCAATCTGGTGCCGCGTTTCTTTGATGCTACCGAAGGCCAGGTTTTGATTGAT
GGGGTAAATGTAAAAGATTATGATACAGAAGCCTTGTATAACAAAATCGGTTATGTTCCTCAAAAGGCGGTATTATTCCG
TGGCAGTGTAAGTTCCAACGTAGCTTATGGTGAAAATGGGAAAGAGACTGTCAGTGAAGAACAAGTCAGAAAAGCAGTGG
CTATCGCACAGGGAACGGACTTTGTGGAAGCAATGGATAGCGGGTACTATGCAGATATTTCCCAGGGAGGCACTAATGTA
TCCGGCGGACAGAAACAGAGACTTGCAATTGCCCGTGCAGTCTGTCGGGATCCAGAAATCTATATTTTCGATGACAGCTT
TTCTGCACTGGATTACAAAACAGACCGGGTACTTCGAAGTGCTCTTAAGAAGGAGACCGCCGGAATAACCAGTCTGATTG
TTGCCCAGCGTATCGGTACCATTATGGATGCAGATCAGATCATTGTTCTGGATGAAGGAAGAATGGTGGGAAAGGGTACC
CACAAAGAACTTCTGGCAACATGTCAGGTATATAAAGAAATCGCAATGTCACAACTTAGTGAGGAGGAACTTGTATCATG
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1MIU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

54.698

100

0.556

Multiple sequence alignment