Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HMPREF0833_RS05585 Genome accession   NC_015678
Coordinates   1174587..1175084 (-) Length   165 a.a.
NCBI ID   WP_003008622.1    Uniprot ID   V8BCW4
Organism   Streptococcus parasanguinis ATCC 15912     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1168496..1178678 1174587..1175084 within 0


Gene organization within MGE regions


Location: 1168496..1178678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS05550 (HMPREF0833_11128) - 1168496..1170931 (-) 2436 WP_013904095.1 class I SAM-dependent DNA methyltransferase -
  HMPREF0833_RS05555 (HMPREF0833_11130) - 1171220..1172134 (+) 915 WP_013904097.1 IS1595 family transposase -
  HMPREF0833_RS05560 (HMPREF0833_11131) - 1172127..1172564 (+) 438 WP_013904098.1 hypothetical protein -
  HMPREF0833_RS05565 (HMPREF0833_11132) - 1172618..1172902 (+) 285 WP_013904099.1 hypothetical protein -
  HMPREF0833_RS05570 (HMPREF0833_11133) - 1172895..1173452 (+) 558 WP_013904100.1 DUF6036 family nucleotidyltransferase -
  HMPREF0833_RS05575 (HMPREF0833_11134) - 1173551..1174048 (-) 498 Protein_1101 GNAT family N-acetyltransferase -
  HMPREF0833_RS05580 (HMPREF0833_11135) rpsR 1174306..1174545 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  HMPREF0833_RS05585 (HMPREF0833_11136) ssbA 1174587..1175084 (-) 498 WP_003008622.1 single-stranded DNA-binding protein Machinery gene
  HMPREF0833_RS05590 (HMPREF0833_11137) rpsF 1175105..1175395 (-) 291 WP_003005040.1 30S ribosomal protein S6 -
  HMPREF0833_RS05595 (HMPREF0833_11138) - 1175695..1176747 (+) 1053 WP_013904102.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  HMPREF0833_RS05600 (HMPREF0833_11139) - 1176734..1177636 (+) 903 WP_013904103.1 phosphodiester glycosidase family protein -
  HMPREF0833_RS05605 (HMPREF0833_11140) - 1177617..1178027 (+) 411 WP_013904104.1 hypothetical protein -
  HMPREF0833_RS05610 (HMPREF0833_11141) - 1178226..1178678 (-) 453 WP_013904105.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17919.68 Da        Isoelectric Point: 4.9371

>NTDB_id=41387 HMPREF0833_RS05585 WP_003008622.1 1174587..1175084(-) (ssbA) [Streptococcus parasanguinis ATCC 15912]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRAAREGHAGGGYSSGNGGFAGNATPSFGGSEPSNAAPNFGREENPFGANPMDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=41387 HMPREF0833_RS05585 WP_003008622.1 1174587..1175084(-) (ssbA) [Streptococcus parasanguinis ATCC 15912]
ATGATTAACAATGTTGTACTTGTCGGTCGTATGACCCGTGATGCTGAACTTCGCTACACTCCAAGCAATCAAGCAGTTGC
TACTTTCAGCCTAGCTGTCAACCGCAACTTCAAGAGTCAAAATGGAGAGCGCGAAGCCGATTTCATCAACTGTGTGATCT
GGCGTCAGCAAGCAGAAAACTTAGCCAACTGGGCTAAGAAAGGTGCTTTGATTGGGATTACCGGTCGCATTCAAACACGT
AATTACGAAAACCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCAGACAGCTTCCAACTATTGGAAAGCCGTGC
AGCACGCGAAGGGCATGCAGGTGGTGGCTATTCATCAGGCAACGGTGGTTTTGCTGGAAATGCAACCCCAAGCTTTGGTG
GATCTGAACCAAGCAATGCAGCGCCAAACTTTGGTCGTGAAGAAAATCCATTTGGAGCCAATCCAATGGATATCTCAGAC
GACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BCW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.857

100

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

58.824

100

0.606
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.137

70.909

0.37
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.061

0.364
  ssbB/cilA Streptococcus pneumoniae R6

51.282

70.909

0.364
  ssbB/cilA Streptococcus mitis SK321

51.282

70.909

0.364
  ssbB/cilA Streptococcus mitis NCTC 12261

51.282

70.909

0.364
  ssbB/cilA Streptococcus pneumoniae Rx1

51.282

70.909

0.364
  ssbB/cilA Streptococcus pneumoniae D39

51.282

70.909

0.364

Multiple sequence alignment