Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GT360_RS00410 Genome accession   NZ_CP047475
Coordinates   78179..79306 (+) Length   375 a.a.
NCBI ID   WP_164647019.1    Uniprot ID   -
Organism   Vibrio astriarenae strain HN897     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 73179..84306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT360_RS00390 (GT360_00390) rsmB 74155..75435 (-) 1281 WP_164647015.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GT360_RS00395 (GT360_00395) fmt 75516..76463 (-) 948 WP_164647016.1 methionyl-tRNA formyltransferase -
  GT360_RS00400 (GT360_00400) def 76483..77004 (-) 522 WP_164647017.1 peptide deformylase -
  GT360_RS00405 (GT360_00405) - 77133..78179 (+) 1047 WP_164647018.1 LysM peptidoglycan-binding domain-containing protein -
  GT360_RS00410 (GT360_00410) dprA 78179..79306 (+) 1128 WP_164647019.1 DNA-processing protein DprA Machinery gene
  GT360_RS00415 (GT360_00415) - 79303..79779 (+) 477 WP_164647020.1 DUF494 family protein -
  GT360_RS00420 (GT360_00420) - 79789..80364 (+) 576 WP_164647021.1 type I DNA topoisomerase -
  GT360_RS00425 (GT360_00425) - 80429..81556 (-) 1128 WP_164647022.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GT360_RS00430 (GT360_00430) purE 81560..82045 (-) 486 WP_164647023.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GT360_RS00435 (GT360_00435) - 82228..82785 (+) 558 WP_164647024.1 L-threonylcarbamoyladenylate synthase -
  GT360_RS00440 (GT360_00440) hemF 82833..83753 (+) 921 WP_239502569.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 40641.49 Da        Isoelectric Point: 6.6581

>NTDB_id=413604 GT360_RS00410 WP_164647019.1 78179..79306(+) (dprA) [Vibrio astriarenae strain HN897]
MKEQELAAWLALSLTPRLRAKTFEKIVSLDAPKQWLSRSVSELQSVGFTAAQIDYLKHHSEAKVNALLQWKASNDHHNIV
TQQDEAYPPLLKQVSNPPRVLFVSGRLSALSTTQIAMVGSRHATIDGLNLARQFAKQLAENQLTITSGLALGIDGYAHQG
ALDAGGCTVAALGSGLDCLYPAKHRALAEQIVSTGALVSEFPPDTPPKRENFPRRNRIISGLSTGVLVVEAAEKSGSLIT
ARYAAEQGRDVFAIPGSIHLPTYRGNNQLIKNGACLVQTVDDILCEIDTLVRWTQQAVAPSLLDPHENLPADTQQELPFP
ELFANVGLEPTPIDILVSRTHIPIQELMNQLLELELLGVVTSVPGGYVRLGGGKR

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=413604 GT360_RS00410 WP_164647019.1 78179..79306(+) (dprA) [Vibrio astriarenae strain HN897]
ATGAAAGAGCAAGAACTAGCGGCTTGGCTAGCCCTTTCATTGACCCCAAGGTTGCGGGCAAAAACGTTTGAAAAGATAGT
CAGTCTTGATGCGCCAAAACAGTGGCTATCAAGGTCAGTTTCTGAGTTGCAGTCCGTGGGCTTTACTGCGGCGCAGATAG
ATTATTTAAAACACCACAGCGAAGCGAAAGTAAACGCTTTGCTGCAGTGGAAAGCGTCGAATGACCATCACAATATTGTG
ACGCAGCAAGATGAGGCCTATCCGCCACTACTCAAACAGGTTTCAAATCCACCGAGAGTATTGTTTGTTAGTGGCCGTCT
GTCCGCTTTGTCGACAACACAGATTGCCATGGTAGGCAGTCGACACGCAACGATTGATGGGTTGAATCTGGCGAGGCAAT
TCGCCAAGCAGTTGGCAGAGAACCAATTGACCATTACCAGTGGTTTAGCATTAGGTATCGACGGCTATGCCCATCAAGGC
GCGCTTGATGCTGGAGGCTGCACTGTTGCCGCTCTTGGGTCTGGGTTGGATTGCCTCTATCCAGCGAAACATCGTGCGCT
CGCAGAGCAAATTGTCTCAACGGGTGCACTCGTCTCAGAATTTCCCCCCGACACGCCTCCAAAAAGAGAGAACTTTCCTC
GTCGCAACCGTATTATTAGTGGCCTATCTACCGGAGTATTAGTGGTTGAAGCGGCGGAAAAAAGTGGCTCTTTGATCACT
GCTCGATATGCGGCAGAGCAAGGTAGAGATGTCTTCGCCATACCTGGCTCTATTCATCTTCCTACCTATAGGGGTAACAA
CCAACTGATAAAAAACGGTGCCTGCTTGGTGCAAACGGTGGATGACATTTTGTGTGAAATTGACACTCTAGTGCGTTGGA
CTCAGCAAGCGGTGGCGCCATCGTTGCTTGATCCACATGAAAACTTGCCCGCAGATACACAACAAGAATTGCCATTTCCT
GAACTGTTCGCTAACGTAGGATTAGAACCGACGCCTATTGATATTTTGGTGAGTCGGACCCATATACCAATACAAGAATT
AATGAATCAACTTCTTGAGCTCGAGCTGCTTGGTGTGGTGACTTCCGTCCCCGGTGGTTACGTTCGTTTAGGGGGAGGCA
AACGATGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(320-366)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.827

98.4

0.549
  dprA Vibrio cholerae strain A1552

53.887

99.467

0.536
  dprA Glaesserella parasuis strain SC1401

46.4

100

0.464
  dprA Neisseria gonorrhoeae strain FA1090

37.713

100

0.413
  dprA Neisseria gonorrhoeae MS11

37.47

100

0.411
  dprA Legionella pneumophila strain ERS1305867

41.962

97.867

0.411
  dprA Neisseria meningitidis strain C311

37.255

100

0.405
  dprA Neisseria meningitidis MC58

37.255

100

0.405
  dprA Haemophilus influenzae Rd KW20

44.179

89.333

0.395

Multiple sequence alignment