Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   H5J27_RS09940 Genome accession   NZ_CP059995
Coordinates   2132305..2132628 (+) Length   107 a.a.
NCBI ID   WP_003150898.1    Uniprot ID   A0A2R3IP58
Organism   Pseudomonas aeruginosa strain NY3045     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2127305..2137628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5J27_RS09925 (H5J27_09925) - 2128105..2129061 (+) 957 WP_003150895.1 SDR family oxidoreductase -
  H5J27_RS09930 (H5J27_09930) - 2129063..2130082 (+) 1020 WP_003150897.1 glycosyltransferase family 4 protein -
  H5J27_RS09935 (H5J27_09935) - 2130117..2132114 (+) 1998 WP_033977396.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  H5J27_RS09940 (H5J27_09940) comE1/comEA 2132305..2132628 (+) 324 WP_003150898.1 ComEA family DNA-binding protein Machinery gene
  H5J27_RS09950 (H5J27_09950) - 2132846..2134042 (-) 1197 WP_003150900.1 amino acid aminotransferase -
  H5J27_RS09955 (H5J27_09955) uvrB 2134229..2136241 (+) 2013 WP_003150902.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11221.07 Da        Isoelectric Point: 6.4592

>NTDB_id=412184 H5J27_RS09940 WP_003150898.1 2132305..2132628(+) (comE1/comEA) [Pseudomonas aeruginosa strain NY3045]
MHLIKSALFLILFACLPFSASAAPAAAKPPVVATTPTEASTAEVVNINTADEATLVRGLNGVGEVKAKAIVEYRTAHGPF
VSLDQLLEVKGVGPALLEKNRERIAIE

Nucleotide


Download         Length: 324 bp        

>NTDB_id=412184 H5J27_RS09940 WP_003150898.1 2132305..2132628(+) (comE1/comEA) [Pseudomonas aeruginosa strain NY3045]
ATGCACCTAATCAAATCCGCCTTGTTCCTCATCCTGTTCGCCTGCCTGCCGTTTTCGGCTTCCGCCGCGCCGGCCGCCGC
CAAGCCTCCGGTGGTCGCGACAACGCCGACGGAGGCGTCGACAGCGGAGGTGGTCAATATCAATACGGCCGACGAGGCGA
CGCTGGTGCGTGGGTTGAACGGCGTCGGCGAGGTCAAGGCCAAGGCGATCGTCGAATACCGAACGGCTCATGGTCCGTTC
GTTTCGCTGGATCAGTTGCTGGAAGTGAAGGGCGTGGGACCGGCGCTGCTGGAGAAGAACCGGGAGCGGATCGCCATAGA
GTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(42-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IP58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

43.689

96.262

0.421
  comEA/comE1 Glaesserella parasuis strain SC1401

42.308

97.196

0.411
  comEA Vibrio parahaemolyticus RIMD 2210633

42.268

90.654

0.383
  comEA Vibrio cholerae C6706

39.423

97.196

0.383
  comEA Vibrio cholerae strain A1552

39.423

97.196

0.383
  comEA Acinetobacter baylyi ADP1

54.054

69.159

0.374
  comEA Acinetobacter baumannii strain A118

29.323

100

0.364