Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   H5J27_RS09955 Genome accession   NZ_CP059995
Coordinates   2134229..2136241 (+) Length   670 a.a.
NCBI ID   WP_003150902.1    Uniprot ID   A0A2R3IUR1
Organism   Pseudomonas aeruginosa strain NY3045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2129229..2141241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5J27_RS09935 (H5J27_09935) - 2130117..2132114 (+) 1998 WP_033977396.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  H5J27_RS09940 (H5J27_09940) comE1/comEA 2132305..2132628 (+) 324 WP_003150898.1 ComEA family DNA-binding protein Machinery gene
  H5J27_RS09950 (H5J27_09950) - 2132846..2134042 (-) 1197 WP_003150900.1 amino acid aminotransferase -
  H5J27_RS09955 (H5J27_09955) uvrB 2134229..2136241 (+) 2013 WP_003150902.1 excinuclease ABC subunit UvrB Machinery gene
  H5J27_RS09960 (H5J27_09960) - 2136245..2137744 (-) 1500 WP_074197481.1 MDR family MFS transporter -
  H5J27_RS09965 (H5J27_09965) - 2137794..2138828 (-) 1035 WP_034039983.1 HlyD family secretion protein -
  H5J27_RS09970 (H5J27_09970) - 2138931..2139851 (+) 921 WP_033977391.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 76069.29 Da        Isoelectric Point: 5.0933

>NTDB_id=412185 H5J27_RS09955 WP_003150902.1 2134229..2136241(+) (uvrB) [Pseudomonas aeruginosa strain NY3045]
MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKTFF
PHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHL
DRGDRIDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGEP
PPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEA
EHAGRVIEQVVRPTGLVDPEIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADNVTGSMQ
RAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPGARGKRKGVAKVAEESGRYDNELRSPSEISKRIRQLEEK
MYQLARDLEFEAAAQLRDEIQTLRERLVNV

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=412185 H5J27_RS09955 WP_003150902.1 2134229..2136241(+) (uvrB) [Pseudomonas aeruginosa strain NY3045]
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCCGCCGGCGACCAGCCGGAGGCCATCCGGCAGATGGTCGAGGGGTT
GGAGGCGGGGCTTTCGCACCAGACCCTGCTCGGAGTGACGGGGTCGGGCAAGACCTTCAGCATCGCCAACGTGATCGCCC
AGGTGCAGCGCCCGACCCTGGTCCTGGCGCCGAACAAGACTCTGGCGGCCCAGCTCTACGGGGAGTTCAAGACGTTCTTT
CCGCATAATTCGGTGGAGTACTTCGTTTCCTACTACGACTACTACCAGCCGGAGGCCTACGTACCATCCTCCGATACCTA
TATCGAGAAGGACTCGTCGATCAACGACCACATCGAGCAGATGCGCCTGTCGGCGACCAAGGCGCTGCTCGAGCGGCCGG
ATGCGATCATCGTCGCCACCGTGTCGTCCATCTACGGCCTCGGCGACCCCGCCTCGTACCTGAAGATGGTCCTGCACCTG
GACCGCGGCGACCGCATCGACCAGCGTGAGCTGCTACGGCGCCTGACCAGCCTGCAGTACACCCGCAACGACATGGACTT
CGCCCGCGCGACCTTCCGTGTGCGTGGCGACGTGATCGACATCTTCCCGGCCGAATCCGATCTCGAGGCGATCCGTGTCG
AGCTGTTCGACGACGAAGTGGAAAGTCTCTCGGCCTTCGACCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTGACTCCGCGCGAGACGCTGCTGGAGGCGGTCGATCAGATCAAAGCCGAACTCAA
GGAACGCCTGGACTACCTGCGCAACAACAACAAGCTGGTGGAAGCGCAGCGCCTGGAGCAGCGCACGCGTTTCGACCTGG
AGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAACTACTCGCGCTACCTTTCCGGGCGCGCCCCCGGCGAGCCG
CCGCCAACGCTCTATGACTACCTGCCGGCCAACTCGCTGCTGGTCATCGACGAATCGCACGTCAGCGTTCCGCAGGTCGG
CGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAAACCCTGGTGGAATACGGTTTCCGTCTGCCTTCGGCTTTGGACAACC
GGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTGAGTCCGCAGACCATCTTCGTTTCCGCGACCCCCGGGCCCTACGAGGCG
GAGCACGCCGGGCGGGTCATCGAACAGGTGGTACGACCCACCGGCCTGGTCGATCCGGAGATCGAGGTGCGCCCGGCGAT
GACCCAGGTCGACGACCTGCTGTCGCAGATCCGCCAGCGCGTGGCCAAGGACGAGCGGGTGCTGGTGACCACCCTGACCA
AGCGCATGGCCGAAGACCTCACCGATTATCTCGGCGATCACGACGTGCGGGTCCGCTACCTGCACTCGGACATCGATACC
GTCGAGCGGGTGGAGATCATCCGCGACCTGCGCTCCGGCGCCTTCGACGTGCTGGTGGGAATCAACCTCCTGCGCGAGGG
CCTGGACATGCCGGAGGTATCGCTGGTGGCGATCCTCGACGCGGACAAGGAAGGTTTCCTGCGCTCGGAGCGCTCGCTGA
TCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATTCTTTACGCCGACAACGTCACCGGCTCGATGCAG
CGCGCGATCGACGAGACCGAGCGGCGGCGGGCCAAGCAGATCGCCTTCAACGAAGCCCACGGCATCGTGCCCAAGGGCGT
GCGCAAGGACATCAAGGACATCCTCGAGGGCGCGGTGGTGCCCGGCGCGCGCGGCAAGCGCAAGGGCGTGGCCAAGGTCG
CGGAGGAGAGCGGGCGCTACGACAACGAACTGCGTTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAGCTGGAGGAAAAG
ATGTACCAGTTGGCTCGCGACCTGGAGTTCGAAGCCGCGGCGCAACTGCGCGACGAGATCCAGACGCTGCGCGAGCGCCT
GGTCAACGTCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-248)

UvrB/uvrC motif (UVR)

(632-665)

Ultra-violet resistance protein B (UvrB)

(550-592)

Helicase conserved C-terminal domain (Helicase_C)

(435-542)

Type III restriction enzyme, res subunit (ResIII)

(11-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IUR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.991

98.06

0.569
  uvrB Streptococcus pneumoniae R6

57.991

98.06

0.569
  uvrB Streptococcus pneumoniae D39

57.991

98.06

0.569