Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GKS41_RS10970 Genome accession   NZ_CP047268
Coordinates   2181477..2182727 (+) Length   416 a.a.
NCBI ID   WP_159354176.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2176477..2187727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS10940 yfmH 2176560..2177846 (+) 1287 WP_159354175.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GKS41_RS10945 ymfI 2177906..2178634 (+) 729 WP_039251477.1 elongation factor P 5-aminopentanone reductase -
  GKS41_RS10950 - 2178709..2178966 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  GKS41_RS10955 - 2179094..2179885 (+) 792 WP_007409819.1 DUF3388 domain-containing protein -
  GKS41_RS10960 - 2179904..2180803 (+) 900 WP_014417801.1 helix-turn-helix domain-containing protein -
  GKS41_RS10965 pgsA 2180878..2181459 (+) 582 WP_007611521.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GKS41_RS10970 cinA 2181477..2182727 (+) 1251 WP_159354176.1 competence/damage-inducible protein A Machinery gene
  GKS41_RS10975 recA 2182898..2183941 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  GKS41_RS10980 - 2184109..2185290 (+) 1182 WP_159354177.1 serine hydrolase domain-containing protein -
  GKS41_RS10985 rny 2185583..2187142 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45182.54 Da        Isoelectric Point: 5.3889

>NTDB_id=412010 GKS41_RS10970 WP_159354176.1 2181477..2182727(+) (cinA) [Bacillus velezensis strain DH8043]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAERKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=412010 GKS41_RS10970 WP_159354176.1 2181477..2182727(+) (cinA) [Bacillus velezensis strain DH8043]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTAGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCTGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTCGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGTGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCGGCGGAAAGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus mitis SK321

47.129

100

0.474
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.651

100

0.469
  cinA Streptococcus pneumoniae R6

46.651

100

0.469
  cinA Streptococcus pneumoniae D39

46.411

100

0.466
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385

Multiple sequence alignment