Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BCO26_RS06220 Genome accession   NC_015634
Coordinates   1262709..1263941 (+) Length   410 a.a.
NCBI ID   WP_187287473.1    Uniprot ID   -
Organism   Heyndrickxia coagulans 2-6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1257709..1268941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCO26_RS06195 (BCO26_1203) ymfI 1258822..1259544 (+) 723 WP_013859158.1 elongation factor P 5-aminopentanone reductase -
  BCO26_RS06200 (BCO26_1204) - 1259741..1260001 (+) 261 WP_013859159.1 DUF3243 domain-containing protein -
  BCO26_RS06205 (BCO26_1205) - 1260193..1260984 (+) 792 WP_017554614.1 DUF3388 domain-containing protein -
  BCO26_RS06210 (BCO26_1206) - 1261001..1261903 (+) 903 WP_013859161.1 RodZ family helix-turn-helix domain-containing protein -
  BCO26_RS06215 (BCO26_1207) pgsA 1261959..1262537 (+) 579 WP_019721121.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BCO26_RS06220 (BCO26_1208) cinA 1262709..1263941 (+) 1233 WP_187287473.1 competence/damage-inducible protein A Machinery gene
  BCO26_RS06225 (BCO26_1210) recA 1264210..1265277 (+) 1068 WP_019721123.1 recombinase RecA Machinery gene
  BCO26_RS06230 (BCO26_1212) rny 1265752..1267314 (+) 1563 WP_013859167.1 ribonuclease Y -
  BCO26_RS06235 (BCO26_1213) - 1267401..1268201 (+) 801 WP_013859168.1 TIGR00282 family metallophosphoesterase -
  BCO26_RS06240 (BCO26_1214) spoVS 1268572..1268832 (+) 261 WP_013859169.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44856.52 Da        Isoelectric Point: 5.7068

>NTDB_id=41183 BCO26_RS06220 WP_187287473.1 1262709..1263941(+) (cinA) [Heyndrickxia coagulans 2-6]
MNAEIIAVGSELLLGQITNTNATFIAAQLAEIGVDVYYQTVVGDNAERLEAAIRTAEGRADLLIFTGGLGPTKDDLTKET
IASHIGKKLVTDEDAMRSIEQFFIRTKRKMTENNKKQALVIEGSKVFPNDHGMAPGMLAKSRNHYYMLLPGPPHELEPMF
IHYASPAIQDELETIEKIESRVLRFFGIGESQLETEIRQILETQSNPTVAPLAKEGEVTLRITAKHQSVATANQMIDQVE
KEILQIAGSYFYGYNDTTLMEALIEKLSEKQLTLACAESLTAGKFAAEMASIQGVSTMLKGGVVVYSNEAKMKLAKVKKE
TLDKYGAVSSQCAKELAENIRSIMDADIGISFTGVAGPDSLEGHPPGTVWIGIAIKGKETAAYLLELSGSRNNVRTRSVK
YGCWHLLKLL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=41183 BCO26_RS06220 WP_187287473.1 1262709..1263941(+) (cinA) [Heyndrickxia coagulans 2-6]
GTGAATGCCGAAATAATTGCAGTCGGTTCGGAACTTTTGCTTGGCCAGATCACCAATACAAACGCCACATTTATTGCCGC
GCAATTGGCGGAAATCGGCGTGGATGTGTACTATCAGACCGTTGTCGGCGATAACGCAGAGCGGCTCGAAGCGGCAATCC
GTACAGCGGAGGGCCGCGCCGATTTATTGATTTTTACTGGCGGGCTCGGTCCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCATCGCATATCGGAAAAAAACTGGTCACAGACGAAGATGCCATGCGTTCCATCGAACAGTTTTTTATCCGTACAAA
ACGAAAAATGACGGAAAACAACAAAAAGCAGGCGCTTGTCATTGAAGGCTCGAAAGTGTTTCCGAATGACCACGGCATGG
CGCCGGGCATGCTGGCCAAAAGCCGAAACCACTATTACATGCTGCTCCCCGGCCCGCCGCATGAACTGGAACCGATGTTT
ATCCATTATGCCAGTCCCGCGATCCAGGATGAACTGGAAACGATCGAAAAAATCGAATCGCGCGTTCTCCGTTTCTTCGG
GATCGGCGAATCCCAACTGGAAACAGAAATCCGCCAAATATTGGAAACCCAGAGCAATCCGACTGTTGCTCCGCTTGCGA
AAGAAGGGGAAGTGACACTCAGGATTACGGCGAAACACCAGTCGGTGGCAACGGCGAACCAAATGATCGATCAAGTGGAA
AAAGAGATTCTGCAAATTGCCGGATCGTATTTTTACGGTTATAACGATACGACGTTAATGGAGGCCCTGATTGAAAAACT
TTCAGAAAAACAGCTGACGCTGGCCTGCGCGGAAAGCCTGACTGCCGGCAAATTTGCAGCGGAAATGGCGTCCATCCAGG
GTGTCAGCACGATGCTGAAAGGCGGCGTTGTTGTCTATTCGAACGAAGCGAAGATGAAGCTTGCCAAAGTGAAAAAAGAA
ACACTTGACAAGTACGGCGCCGTCAGCAGCCAGTGTGCAAAAGAACTGGCGGAAAATATCCGCAGCATCATGGATGCCGA
CATTGGCATCAGTTTTACAGGTGTGGCCGGCCCGGACTCCCTTGAAGGCCATCCGCCGGGAACCGTGTGGATCGGCATTG
CCATAAAAGGGAAAGAAACGGCCGCCTATCTGTTGGAACTTTCCGGATCCCGGAACAACGTCCGCACGAGATCGGTGAAA
TACGGCTGCTGGCATTTGCTGAAACTGCTTTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.618

99.512

0.563
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.476
  cinA Streptococcus mitis SK321

46.411

100

0.473
  cinA Streptococcus pneumoniae R6

46.172

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.172

100

0.471
  cinA Streptococcus pneumoniae D39

45.933

100

0.468
  cinA Streptococcus mutans UA159

45.113

97.317

0.439
  cinA Streptococcus suis isolate S10

39.683

92.195

0.366

Multiple sequence alignment