Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GSR16_RS18770 Genome accession   NZ_CP047241
Coordinates   4038019..4039092 (+) Length   357 a.a.
NCBI ID   WP_159880035.1    Uniprot ID   -
Organism   Aquitalea denitrificans strain 5YN1-3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4033019..4044092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSR16_RS18745 rsmB 4033100..4034353 (-) 1254 WP_159880027.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GSR16_RS18750 htpX 4034465..4035307 (-) 843 WP_159880903.1 zinc metalloprotease HtpX -
  GSR16_RS18755 fmt 4035351..4036271 (-) 921 WP_159880029.1 methionyl-tRNA formyltransferase -
  GSR16_RS18760 def 4036356..4036859 (-) 504 WP_159880031.1 peptide deformylase -
  GSR16_RS18765 - 4036985..4038022 (+) 1038 WP_159880033.1 LysM peptidoglycan-binding domain-containing protein -
  GSR16_RS18770 dprA 4038019..4039092 (+) 1074 WP_159880035.1 DNA-processing protein DprA Machinery gene
  GSR16_RS18775 - 4039134..4039592 (+) 459 WP_159880037.1 DUF494 family protein -
  GSR16_RS18780 topA 4039763..4042060 (+) 2298 WP_159880039.1 type I DNA topoisomerase -
  GSR16_RS18785 - 4042358..4042756 (+) 399 WP_159880041.1 hypothetical protein -
  GSR16_RS18790 - 4042747..4043127 (-) 381 WP_159880043.1 DUF1622 domain-containing protein -
  GSR16_RS18795 - 4043246..4043995 (+) 750 WP_159880045.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 37228.73 Da        Isoelectric Point: 5.9015

>NTDB_id=411805 GSR16_RS18770 WP_159880035.1 4038019..4039092(+) (dprA) [Aquitalea denitrificans strain 5YN1-3]
MSQATEDWLLLALTPGIGPAGFLKLIAGFGSASQALAASTAQTTPILGQEAACALRDRLAGPSVEAALAWASQPDCTLLS
LLDDDYPQALAETASPPPLLFARGQRALLQRPMLAMVGSRSATPPGKQIAEDFARRLSALGYTIVSGMASGIDAAAHRGA
LQETGSSIAVIGTGIDRVYPASNRELAHQLGSTGLILSEFPLGAGPLASHFPRRNRIIAGLSRGCLVVEANINSGSLITA
RLSGEYGREVMAIPGSIHNPQARGCHRLLKDGARLIETVEDVLEEVGRPAVISPQPRLDSHVAEHPVLALLGFDPVSSET
LAVQLGLTQGELYAMLLELELAGKLASLPGGQVQRLV

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=411805 GSR16_RS18770 WP_159880035.1 4038019..4039092(+) (dprA) [Aquitalea denitrificans strain 5YN1-3]
ATGAGCCAGGCCACGGAAGACTGGCTGTTGCTGGCGCTGACACCGGGCATAGGCCCGGCTGGCTTTCTCAAGCTGATTGC
CGGCTTTGGCTCGGCCAGCCAAGCCCTTGCCGCCAGTACGGCGCAGACCACGCCCATTCTGGGCCAGGAAGCGGCATGCG
CACTGCGCGACCGGCTGGCCGGCCCCTCCGTGGAGGCCGCACTGGCCTGGGCATCCCAACCTGACTGTACCTTGCTCAGC
CTGCTGGATGATGATTATCCGCAGGCGCTGGCCGAAACAGCGTCGCCACCACCGCTGCTGTTTGCCCGTGGCCAGCGGGC
ATTATTGCAACGCCCCATGCTGGCCATGGTGGGCAGCCGCAGCGCGACCCCACCGGGAAAGCAGATTGCCGAAGACTTTG
CCCGCCGGCTGTCCGCCCTGGGTTATACCATCGTCAGTGGCATGGCCAGCGGCATTGATGCCGCCGCGCACCGTGGTGCC
TTGCAGGAAACCGGTTCCAGCATTGCTGTCATCGGTACCGGTATCGACCGGGTTTATCCGGCCAGCAACCGCGAACTGGC
CCACCAGCTTGGTAGTACCGGCCTGATTCTGTCTGAATTTCCATTGGGAGCCGGCCCGCTCGCCAGCCACTTTCCGCGTC
GCAACCGCATCATTGCCGGGCTTTCGCGCGGCTGCCTGGTGGTGGAAGCCAATATCAACTCCGGTTCGCTGATTACCGCC
AGACTCTCCGGCGAGTACGGGCGCGAAGTCATGGCCATTCCCGGCTCCATTCACAATCCACAGGCACGAGGCTGCCACCG
TTTGCTGAAAGATGGAGCCCGGCTGATCGAAACGGTGGAGGATGTCCTGGAAGAAGTGGGCCGACCGGCAGTAATCAGCC
CGCAGCCACGGCTGGATAGCCACGTCGCCGAGCACCCGGTTTTGGCACTGCTGGGCTTTGATCCGGTCAGCAGTGAGACA
CTTGCCGTGCAACTCGGGTTGACGCAGGGGGAGCTTTACGCGATGCTGCTCGAGCTGGAGCTTGCCGGCAAGCTGGCCAG
CTTGCCTGGCGGGCAGGTCCAGCGGCTGGTCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(299-351)

DNA recombination-mediator protein A (DNA_processg_A)

(73-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

46.684

100

0.513
  dprA Neisseria gonorrhoeae strain FA1090

46.684

100

0.513
  dprA Neisseria meningitidis strain C311

45.96

100

0.51
  dprA Neisseria meningitidis MC58

45.96

100

0.51
  dprA Vibrio campbellii strain DS40M4

40.616

100

0.406
  dprA Vibrio cholerae strain A1552

36.533

100

0.384
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.975

100

0.37
  dprA Acinetobacter baumannii strain A118

39.053

94.678

0.37
  dprA Legionella pneumophila strain ERS1305867

44.558

82.353

0.367
  dprA Acinetobacter baumannii D1279779

38.166

94.678

0.361

Multiple sequence alignment