Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GRT08_RS08685 Genome accession   NZ_CP047234
Coordinates   1705376..1706626 (+) Length   416 a.a.
NCBI ID   WP_043867100.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1700376..1711626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS08655 (GRT08_08540) yfmH 1700460..1701746 (+) 1287 WP_071391821.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GRT08_RS08660 (GRT08_08545) ymfI 1701805..1702533 (+) 729 WP_377803140.1 elongation factor P 5-aminopentanone reductase -
  GRT08_RS08665 (GRT08_08550) - 1702609..1702866 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  GRT08_RS08670 (GRT08_08555) - 1702994..1703785 (+) 792 WP_003154149.1 YmfK family protein -
  GRT08_RS08675 (GRT08_08560) - 1703804..1704703 (+) 900 WP_071391819.1 RodZ domain-containing protein -
  GRT08_RS08680 (GRT08_08565) pgsA 1704777..1705358 (+) 582 WP_003154147.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GRT08_RS08685 (GRT08_08570) cinA 1705376..1706626 (+) 1251 WP_043867100.1 competence/damage-inducible protein A Machinery gene
  GRT08_RS08690 (GRT08_08575) recA 1706797..1707840 (+) 1044 WP_102422481.1 recombinase RecA Machinery gene
  GRT08_RS08695 (GRT08_08580) - 1708008..1709189 (+) 1182 WP_077722212.1 serine hydrolase -
  GRT08_RS08700 (GRT08_08585) rny 1709482..1711041 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45106.44 Da        Isoelectric Point: 5.3789

>NTDB_id=411679 GRT08_RS08685 WP_043867100.1 1705376..1706626(+) (cinA) [Bacillus amyloliquefaciens strain FJ4]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=411679 GRT08_RS08685 WP_043867100.1 1705376..1706626(+) (cinA) [Bacillus amyloliquefaciens strain FJ4]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCGGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTACCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGATCTGATTATTTTTTCAGGCGGCCTTGGACCGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGACCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGTTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTTACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTCACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.385

100

0.904
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385

Multiple sequence alignment