Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GRQ40_RS17255 Genome accession   NZ_CP047158
Coordinates   3584170..3584514 (-) Length   114 a.a.
NCBI ID   WP_080861607.1    Uniprot ID   -
Organism   Anoxybacillus sp. PDR2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3579170..3589514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRQ40_RS17245 (GRQ40_17245) - 3580268..3583036 (+) 2769 WP_159720548.1 DEAD/DEAH box helicase -
  GRQ40_RS18835 - 3583033..3583167 (+) 135 WP_255458239.1 hypothetical protein -
  GRQ40_RS17250 (GRQ40_17250) - 3583327..3583821 (-) 495 WP_159720550.1 hypothetical protein -
  GRQ40_RS17255 (GRQ40_17255) ssbB 3584170..3584514 (-) 345 WP_080861607.1 single-stranded DNA-binding protein Machinery gene
  GRQ40_RS17260 (GRQ40_17260) - 3584798..3585259 (+) 462 WP_044742424.1 YwpF-like family protein -
  GRQ40_RS17265 (GRQ40_17265) - 3585266..3585886 (-) 621 WP_159720552.1 class D sortase -
  GRQ40_RS17270 (GRQ40_17270) - 3585888..3586850 (-) 963 WP_052660930.1 processed acidic surface protein -
  GRQ40_RS17275 (GRQ40_17275) - 3587230..3588603 (-) 1374 WP_159720554.1 aspartate kinase -
  GRQ40_RS17280 (GRQ40_17280) - 3588696..3589130 (-) 435 WP_066150477.1 DUF1284 domain-containing protein -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12810.67 Da        Isoelectric Point: 9.5364

>NTDB_id=411223 GRQ40_RS17255 WP_080861607.1 3584170..3584514(-) (ssbB) [Anoxybacillus sp. PDR2]
MINQVVLVGRLTKDPELRYTADGAAMANVTLAVSRSFRNTDGEIDTDFIHCKLWRKIAENTAHYCRKGSIIGVMGRIQTR
NYENQAGKRVYVTEIIAESVRFMGGKAAVWSTQE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=411223 GRQ40_RS17255 WP_080861607.1 3584170..3584514(-) (ssbB) [Anoxybacillus sp. PDR2]
ATGATTAACCAGGTCGTGTTAGTCGGCCGTTTGACGAAAGATCCAGAGCTTCGCTATACGGCAGATGGGGCAGCGATGGC
GAATGTGACGCTGGCCGTAAGCCGCAGCTTCCGCAATACGGACGGTGAAATTGATACAGATTTTATTCATTGCAAGCTAT
GGCGAAAAATAGCGGAGAACACGGCTCATTATTGCCGCAAAGGTTCGATTATTGGCGTCATGGGCCGCATTCAAACACGA
AATTACGAAAATCAAGCGGGAAAACGTGTATATGTGACCGAGATTATTGCCGAGTCTGTTCGTTTTATGGGCGGCAAGGC
CGCCGTATGGAGCACGCAAGAGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.29

93.86

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

92.982

0.596
  ssb Latilactobacillus sakei subsp. sakei 23K

56.311

90.351

0.509
  ssbB Lactococcus lactis subsp. cremoris KW2

41.667

94.737

0.395
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.056

93.86

0.395
  ssbA Streptococcus mutans UA159

40.187

93.86

0.377
  ssbB/cilA Streptococcus mitis NCTC 12261

39.252

93.86

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.252

93.86

0.368

Multiple sequence alignment