Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GRQ40_RS07050 Genome accession   NZ_CP047158
Coordinates   1447380..1448624 (+) Length   414 a.a.
NCBI ID   WP_159719620.1    Uniprot ID   -
Organism   Anoxybacillus sp. PDR2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1442380..1453624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRQ40_RS07020 (GRQ40_07020) yfmH 1442509..1443795 (+) 1287 WP_159719619.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GRQ40_RS07025 (GRQ40_07025) ymfI 1443847..1444563 (+) 717 WP_066147318.1 elongation factor P 5-aminopentanone reductase -
  GRQ40_RS07030 (GRQ40_07030) - 1444632..1444880 (+) 249 WP_044746074.1 DUF3243 domain-containing protein -
  GRQ40_RS07035 (GRQ40_07035) - 1445026..1445817 (+) 792 WP_044746073.1 DUF3388 domain-containing protein -
  GRQ40_RS07040 (GRQ40_07040) - 1445841..1446740 (+) 900 WP_066147320.1 helix-turn-helix domain-containing protein -
  GRQ40_RS07045 (GRQ40_07045) pgsA 1446777..1447355 (+) 579 WP_044746072.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GRQ40_RS07050 (GRQ40_07050) cinA 1447380..1448624 (+) 1245 WP_159719620.1 competence/damage-inducible protein A Machinery gene
  GRQ40_RS07055 (GRQ40_07055) recA 1448822..1449463 (+) 642 Protein_1343 recombinase RecA -
  GRQ40_RS07060 (GRQ40_07060) recA 1449804..1450247 (+) 444 WP_370514187.1 hypothetical protein Machinery gene
  GRQ40_RS07065 (GRQ40_07065) rny 1451090..1452649 (+) 1560 WP_066147324.1 ribonuclease Y -
  GRQ40_RS07070 (GRQ40_07070) - 1452735..1453529 (+) 795 WP_044746069.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45076.83 Da        Isoelectric Point: 6.2690

>NTDB_id=411201 GRQ40_RS07050 WP_159719620.1 1447380..1448624(+) (cinA) [Anoxybacillus sp. PDR2]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAELGINVYFHTVVGDNATRLEAAVKAAQKRANLIIFTGGLGPTKDDLTKET
IAHLLQRELVMDQEALRSIEEYFKRTKRTMTENNKKQALVLQGAEVLKNDYGMAPGMALTIASITYMLLPGPPKEMRPMF
IQYGRPFLMSKLERHERIESRVLRFFGIGESQLETEIADLIDQQSNPTIAPLAGDGEVTLRLTAKHESSLEAKKLLDETE
AAIARRVGQYVYGYDNDTLFSKLVERLKEQNKTVAAAESLTGGRFTAELTAISGASQIVKGGVVCYTNEIKEQVLSVPAS
VLATDGAVSEPCAKLLAEHVRSFCKADIGISFTGVAGPDPLEGKPVGTVYVGISISGQETEVHALLLSGDRETIRTRTIK
YGCFAILKKLTASL

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=411201 GRQ40_RS07050 WP_159719620.1 1447380..1448624(+) (cinA) [Anoxybacillus sp. PDR2]
TTGAATGCTGAAATTATTGCGGTCGGCTCAGAGCTGCTATTGGGGCAAATTGCGAATACAAACGCTCAGTTTTTATCGCA
GCAGCTTGCTGAATTAGGGATTAATGTTTATTTTCATACCGTTGTCGGCGACAATGCAACGAGGCTCGAAGCGGCGGTCA
AAGCAGCCCAAAAAAGGGCCAATCTGATTATTTTTACAGGTGGGCTTGGACCGACAAAAGATGATCTGACGAAGGAAACG
ATCGCTCATCTCTTGCAGCGGGAGCTTGTGATGGATCAGGAAGCGCTTCGATCAATTGAGGAGTATTTCAAACGAACCAA
GCGAACGATGACGGAAAATAATAAAAAGCAGGCGCTTGTATTACAAGGAGCAGAAGTGTTGAAAAATGACTACGGAATGG
CTCCAGGCATGGCTCTGACGATTGCGTCGATTACCTACATGCTTTTGCCTGGCCCTCCAAAAGAAATGAGGCCTATGTTT
ATTCAATATGGCCGCCCCTTTCTTATGAGCAAGCTGGAGCGTCATGAGCGCATTGAATCAAGAGTATTGCGTTTTTTTGG
CATTGGCGAATCTCAGTTGGAAACAGAAATTGCCGATTTAATTGACCAGCAATCCAATCCGACGATTGCGCCACTTGCAG
GTGATGGAGAGGTCACATTACGTTTGACAGCCAAACATGAATCATCTTTGGAAGCAAAAAAACTGCTTGATGAGACGGAA
GCCGCCATTGCCCGCCGCGTCGGTCAATATGTGTATGGATATGACAACGATACGTTGTTTTCAAAGCTAGTCGAGCGGCT
AAAGGAGCAAAATAAAACAGTGGCGGCTGCTGAGAGCTTAACAGGCGGTCGGTTTACTGCCGAGCTGACGGCTATTTCTG
GAGCTTCTCAAATAGTAAAAGGCGGGGTTGTTTGCTATACAAACGAAATAAAGGAGCAAGTTCTTTCTGTCCCTGCTTCT
GTGCTGGCAACAGACGGAGCGGTGAGTGAACCATGCGCGAAGTTGCTAGCGGAGCATGTCCGTTCCTTTTGCAAAGCGGA
TATTGGCATTAGTTTTACAGGAGTGGCAGGGCCTGATCCTCTAGAAGGAAAGCCGGTCGGAACGGTGTACGTAGGAATAT
CGATCAGCGGACAAGAAACGGAAGTGCATGCATTATTGTTAAGCGGAGACCGTGAAACGATTCGCACGCGTACCATCAAA
TATGGTTGTTTCGCTATTTTAAAAAAACTGACAGCTTCCTTATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.049

98.551

0.592
  cinA Streptococcus pneumoniae TIGR4

48.456

100

0.493
  cinA Streptococcus pneumoniae Rx1

47.981

100

0.488
  cinA Streptococcus pneumoniae R6

47.981

100

0.488
  cinA Streptococcus pneumoniae D39

47.743

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.494

100

0.481
  cinA Streptococcus mitis SK321

50.131

92.512

0.464
  cinA Streptococcus mutans UA159

47.118

96.377

0.454
  cinA Streptococcus suis isolate S10

41.27

91.304

0.377

Multiple sequence alignment