Detailed information NTG0041050

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: SGPB_RS00620
• Genome accession: NC_015600
• Coordinates: 96787..97218 (+)
• Length: 143 a.a.
• NCBI ID: WP_003062922.1
• Uniprot ID: A0AAW6YJ77
• Organism: Streptococcus pasteurianus ATCC 43144
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 91787..102218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGPB_RS00600 (SGPB_0085)	-	94168..94530 (+)	363	WP_003062916.1	DUF1033 family protein	-
SGPB_RS00605 (SGPB_0086)	comYA	94601..95542 (+)	942	WP_003062917.1	competence type IV pilus ATPase ComGA	Machinery gene
SGPB_RS00610 (SGPB_0087)	comYB	95466..96509 (+)	1044	WP_003062919.1	competence type IV pilus assembly protein ComGB	Machinery gene
SGPB_RS00615 (SGPB_0088)	comGC	96509..96803 (+)	295	Protein_87	competence type IV pilus major pilin ComGC	-
SGPB_RS00620 (SGPB_0089)	comYD	96787..97218 (+)	432	WP_003062922.1	competence type IV pilus minor pilin ComGD	Machinery gene
SGPB_RS00625 (SGPB_0090)	comGE	97172..97465 (+)	294	WP_080543606.1	competence type IV pilus minor pilin ComGE	-
SGPB_RS00630 (SGPB_0091)	comYF	97449..97886 (+)	438	WP_041974065.1	competence type IV pilus minor pilin ComGF	Machinery gene
SGPB_RS00635 (SGPB_0092)	comYG	97858..98190 (+)	333	WP_003062925.1	competence type IV pilus minor pilin ComGG	Machinery gene
SGPB_RS00640 (SGPB_0093)	comYH	98245..99216 (+)	972	WP_003062926.1	class I SAM-dependent methyltransferase	Machinery gene
SGPB_RS00645 (SGPB_0094)	-	99254..100453 (+)	1200	WP_003062927.1	acetate kinase	-
SGPB_RS00650 (SGPB_0095)	-	100614..100814 (+)	201	WP_013851401.1	helix-turn-helix transcriptional regulator	-
SGPB_RS00655 (SGPB_0096)	-	100824..101054 (+)	231	WP_013851402.1	hypothetical protein	-
SGPB_RS00660 (SGPB_0097)	-	101045..101497 (+)	453	WP_003062930.1	hypothetical protein	-
SGPB_RS00665 (SGPB_0098)	-	101509..102147 (+)	639	WP_003062931.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 15989.38 Da
• Isoelectric Point: 8.9601

>NTDB_id=41050 SGPB_RS00620 WP_003062922.1 96787..97218(+) (comYD) [Streptococcus pasteurianus ATCC 43144]
MKLKNKTVSAFTLLESLLTLGIACFIIMMLSGSLNGIFQNVEEKIFFLSFENLYCDTQKLANARQQSFTLTVSQEEVSTD
FSAVKLPPSVKVDKTYQVNFDKAGGNSSLAKLAFQTSDKEFNYQLYLGSGKYKKTETKSLHTP

Nucleotide

• Length: 432 bp

>NTDB_id=41050 SGPB_RS00620 WP_003062922.1 96787..97218(+) (comYD) [Streptococcus pasteurianus ATCC 43144]
ATGAAGCTAAAAAATAAAACAGTTTCAGCTTTTACCCTTTTAGAAAGTTTATTAACACTAGGAATTGCCTGTTTTATTAT
CATGATGTTGTCAGGCTCTTTGAATGGTATTTTTCAAAATGTAGAAGAAAAGATTTTCTTTTTATCGTTTGAAAATCTCT
ATTGTGACACGCAAAAATTAGCTAATGCTAGGCAACAAAGTTTTACGTTGACTGTTTCGCAAGAGGAAGTATCTACTGAT
TTCTCAGCGGTAAAACTCCCTCCATCGGTCAAAGTTGATAAAACTTATCAAGTCAATTTTGACAAAGCAGGAGGTAATTC
GTCCTTGGCAAAATTAGCCTTTCAAACGTCAGATAAAGAGTTCAACTATCAATTATATTTAGGGAGTGGTAAATATAAAA
AGACAGAAACTAAAAGCTTACATACTCCTTGA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	53.435	91.608	0.49
comYD	Streptococcus mutans UA159	53.435	91.608	0.49
comGD/cglD	Streptococcus pneumoniae D39	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae Rx1	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae TIGR4	46.212	92.308	0.427
comGD/cglD	Streptococcus mitis NCTC 12261	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae R6	46.212	92.308	0.427
comGD/cglD	Streptococcus mitis SK321	45.455	92.308	0.42
comYD	Streptococcus gordonii str. Challis substr. CH1	43.704	94.406	0.413