Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYG   Type   Machinery gene
Locus tag   SGPB_RS00635 Genome accession   NC_015600
Coordinates   97858..98190 (+) Length   110 a.a.
NCBI ID   WP_003062925.1    Uniprot ID   -
Organism   Streptococcus pasteurianus ATCC 43144     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 92858..103190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS00600 (SGPB_0085) - 94168..94530 (+) 363 WP_003062916.1 DUF1033 family protein -
  SGPB_RS00605 (SGPB_0086) comYA 94601..95542 (+) 942 WP_003062917.1 competence type IV pilus ATPase ComGA Machinery gene
  SGPB_RS00610 (SGPB_0087) comYB 95466..96509 (+) 1044 WP_003062919.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGPB_RS00615 (SGPB_0088) comGC 96509..96803 (+) 295 Protein_87 competence type IV pilus major pilin ComGC -
  SGPB_RS00620 (SGPB_0089) comYD 96787..97218 (+) 432 WP_003062922.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGPB_RS00625 (SGPB_0090) comGE 97172..97465 (+) 294 WP_080543606.1 competence type IV pilus minor pilin ComGE -
  SGPB_RS00630 (SGPB_0091) comYF 97449..97886 (+) 438 WP_041974065.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGPB_RS00635 (SGPB_0092) comYG 97858..98190 (+) 333 WP_003062925.1 competence type IV pilus minor pilin ComGG Machinery gene
  SGPB_RS00640 (SGPB_0093) comYH 98245..99216 (+) 972 WP_003062926.1 class I SAM-dependent methyltransferase Machinery gene
  SGPB_RS00645 (SGPB_0094) - 99254..100453 (+) 1200 WP_003062927.1 acetate kinase -
  SGPB_RS00650 (SGPB_0095) - 100614..100814 (+) 201 WP_013851401.1 helix-turn-helix transcriptional regulator -
  SGPB_RS00655 (SGPB_0096) - 100824..101054 (+) 231 WP_013851402.1 hypothetical protein -
  SGPB_RS00660 (SGPB_0097) - 101045..101497 (+) 453 WP_003062930.1 hypothetical protein -
  SGPB_RS00665 (SGPB_0098) - 101509..102147 (+) 639 WP_003062931.1 CPBP family intramembrane glutamic endopeptidase -
  SGPB_RS00670 (SGPB_0099) proC 102191..102961 (-) 771 WP_003062932.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12662.69 Da        Isoelectric Point: 7.1983

>NTDB_id=41052 SGPB_RS00635 WP_003062925.1 97858..98190(+) (comYG) [Streptococcus pasteurianus ATCC 43144]
MFTLLKRQVKAGILIYALLMAAIFALLLQFYLGRVVAMERQHQAQLSASQAYLMAELTKDLAKEDTGHLTFDQGVTDYNF
QDNRLQVMVKLPNQQEFDYVFQSVQKEKAN

Nucleotide


Download         Length: 333 bp        

>NTDB_id=41052 SGPB_RS00635 WP_003062925.1 97858..98190(+) (comYG) [Streptococcus pasteurianus ATCC 43144]
TTGTTTACACTTTTGAAACGGCAAGTTAAGGCAGGGATTTTAATCTATGCTTTGCTTATGGCAGCAATTTTTGCCTTGCT
TTTGCAATTTTATCTAGGACGTGTCGTGGCAATGGAGCGACAACACCAAGCGCAGCTATCTGCTAGTCAGGCTTATTTAA
TGGCAGAATTAACAAAAGATTTGGCAAAAGAGGATACTGGTCACCTTACATTTGACCAAGGAGTAACTGACTACAACTTC
CAAGATAATCGATTGCAGGTGATGGTCAAACTGCCTAATCAACAAGAATTTGACTATGTTTTCCAAAGTGTTCAGAAAGA
GAAAGCTAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYG Streptococcus mutans UA140

54.286

95.455

0.518
  comYG Streptococcus mutans UA159

54.286

95.455

0.518
  comGG/cglG Streptococcus mitis NCTC 12261

40.404

90

0.364

Multiple sequence alignment