Detailed information NTG0041051

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: SGPB_RS00630
• Genome accession: NC_015600
• Coordinates: 97449..97886 (+)
• Length: 145 a.a.
• NCBI ID: WP_041974065.1
• Uniprot ID: A0AAW6YJ42
• Organism: Streptococcus pasteurianus ATCC 43144
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 92449..102886

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGPB_RS00600 (SGPB_0085)	-	94168..94530 (+)	363	WP_003062916.1	DUF1033 family protein	-
SGPB_RS00605 (SGPB_0086)	comYA	94601..95542 (+)	942	WP_003062917.1	competence type IV pilus ATPase ComGA	Machinery gene
SGPB_RS00610 (SGPB_0087)	comYB	95466..96509 (+)	1044	WP_003062919.1	competence type IV pilus assembly protein ComGB	Machinery gene
SGPB_RS00615 (SGPB_0088)	comGC	96509..96803 (+)	295	Protein_87	competence type IV pilus major pilin ComGC	-
SGPB_RS00620 (SGPB_0089)	comYD	96787..97218 (+)	432	WP_003062922.1	competence type IV pilus minor pilin ComGD	Machinery gene
SGPB_RS00625 (SGPB_0090)	comGE	97172..97465 (+)	294	WP_080543606.1	competence type IV pilus minor pilin ComGE	-
SGPB_RS00630 (SGPB_0091)	comYF	97449..97886 (+)	438	WP_041974065.1	competence type IV pilus minor pilin ComGF	Machinery gene
SGPB_RS00635 (SGPB_0092)	comYG	97858..98190 (+)	333	WP_003062925.1	competence type IV pilus minor pilin ComGG	Machinery gene
SGPB_RS00640 (SGPB_0093)	comYH	98245..99216 (+)	972	WP_003062926.1	class I SAM-dependent methyltransferase	Machinery gene
SGPB_RS00645 (SGPB_0094)	-	99254..100453 (+)	1200	WP_003062927.1	acetate kinase	-
SGPB_RS00650 (SGPB_0095)	-	100614..100814 (+)	201	WP_013851401.1	helix-turn-helix transcriptional regulator	-
SGPB_RS00655 (SGPB_0096)	-	100824..101054 (+)	231	WP_013851402.1	hypothetical protein	-
SGPB_RS00660 (SGPB_0097)	-	101045..101497 (+)	453	WP_003062930.1	hypothetical protein	-
SGPB_RS00665 (SGPB_0098)	-	101509..102147 (+)	639	WP_003062931.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16184.48 Da
• Isoelectric Point: 8.4590

>NTDB_id=41051 SGPB_RS00630 WP_041974065.1 97449..97886(+) (comYF) [Streptococcus pasteurianus ATCC 43144]
MLKKTSLKAFTLIECLVSLLVISGAILVYNGLTQSISANVHYLSENQEENWLLFSQQLRAELANCQLDKVENNKLYVTKS
SQKLAFGQSKADDFRKTNASGQGYQPMIFGVRSSAISRDGQKVTMTLTLENGLERTFVYTFETAS

Nucleotide

• Length: 438 bp

>NTDB_id=41051 SGPB_RS00630 WP_041974065.1 97449..97886(+) (comYF) [Streptococcus pasteurianus ATCC 43144]
ATGTTAAAAAAGACTAGTTTAAAGGCATTCACCCTCATAGAATGTTTGGTTTCTTTATTGGTAATTTCGGGTGCTATTCT
TGTTTACAATGGCTTAACGCAATCTATTTCTGCAAATGTGCATTATTTGTCGGAAAATCAAGAGGAAAACTGGCTTTTGT
TTTCACAACAGCTGCGTGCGGAACTTGCCAATTGTCAATTAGATAAGGTTGAAAATAACAAGCTATATGTGACGAAGTCC
AGTCAAAAGTTGGCATTTGGACAGTCAAAGGCTGATGATTTTCGTAAAACAAACGCATCTGGTCAAGGCTATCAGCCAAT
GATATTTGGAGTAAGATCTTCTGCTATTTCTAGAGATGGTCAGAAGGTGACAATGACATTGACTTTAGAGAATGGTTTGG
AGAGGACATTTGTTTACACTTTTGAAACGGCAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (41-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.273	95.862	0.559
comYF	Streptococcus mutans UA159	57.554	95.862	0.552
comGF/cglF	Streptococcus pneumoniae Rx1	45	96.552	0.434
comGF/cglF	Streptococcus pneumoniae D39	45	96.552	0.434
comGF/cglF	Streptococcus pneumoniae R6	45	96.552	0.434
comGF/cglF	Streptococcus pneumoniae TIGR4	45	96.552	0.434
comGF/cglF	Streptococcus mitis NCTC 12261	43.662	97.931	0.428
comGF/cglF	Streptococcus mitis SK321	42.958	97.931	0.421
comGF	Lactococcus lactis subsp. cremoris KW2	43.478	95.172	0.414