Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SGPB_RS00640 | Genome accession | NC_015600 |
| Coordinates | 98245..99216 (+) | Length | 323 a.a. |
| NCBI ID | WP_003062926.1 | Uniprot ID | A0AAW6YE98 |
| Organism | Streptococcus pasteurianus ATCC 43144 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 93245..104216
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SGPB_RS00600 (SGPB_0085) | - | 94168..94530 (+) | 363 | WP_003062916.1 | DUF1033 family protein | - |
| SGPB_RS00605 (SGPB_0086) | comYA | 94601..95542 (+) | 942 | WP_003062917.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SGPB_RS00610 (SGPB_0087) | comYB | 95466..96509 (+) | 1044 | WP_003062919.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SGPB_RS00615 (SGPB_0088) | comGC | 96509..96803 (+) | 295 | Protein_87 | competence type IV pilus major pilin ComGC | - |
| SGPB_RS00620 (SGPB_0089) | comYD | 96787..97218 (+) | 432 | WP_003062922.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SGPB_RS00625 (SGPB_0090) | comGE | 97172..97465 (+) | 294 | WP_080543606.1 | competence type IV pilus minor pilin ComGE | - |
| SGPB_RS00630 (SGPB_0091) | comYF | 97449..97886 (+) | 438 | WP_041974065.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SGPB_RS00635 (SGPB_0092) | comYG | 97858..98190 (+) | 333 | WP_003062925.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| SGPB_RS00640 (SGPB_0093) | comYH | 98245..99216 (+) | 972 | WP_003062926.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SGPB_RS00645 (SGPB_0094) | - | 99254..100453 (+) | 1200 | WP_003062927.1 | acetate kinase | - |
| SGPB_RS00650 (SGPB_0095) | - | 100614..100814 (+) | 201 | WP_013851401.1 | helix-turn-helix transcriptional regulator | - |
| SGPB_RS00655 (SGPB_0096) | - | 100824..101054 (+) | 231 | WP_013851402.1 | hypothetical protein | - |
| SGPB_RS00660 (SGPB_0097) | - | 101045..101497 (+) | 453 | WP_003062930.1 | hypothetical protein | - |
| SGPB_RS00665 (SGPB_0098) | - | 101509..102147 (+) | 639 | WP_003062931.1 | CPBP family intramembrane glutamic endopeptidase | - |
| SGPB_RS00670 (SGPB_0099) | proC | 102191..102961 (-) | 771 | WP_003062932.1 | pyrroline-5-carboxylate reductase | - |
| SGPB_RS00675 (SGPB_0100) | pepA | 103022..104089 (-) | 1068 | WP_003062933.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 36594.62 Da Isoelectric Point: 4.4130
>NTDB_id=41053 SGPB_RS00640 WP_003062926.1 98245..99216(+) (comYH) [Streptococcus pasteurianus ATCC 43144]
MNFEKIETAYELILENIQLIENELKTHIYDALIEQNSFYLGAEGASEEVAANNEKLRQLALTKEEWRRAFQFIFIKAGQT
EQLQANHQFTPDAIGFILLFLIENLTDSDKIDLLEIGSGTGNLAQTFLNNSSKELNYLGIEVDDLLIDLSASIAEVMDSD
ARFIQEDAVRPQILQESDVIISDLPVGFYPNDDIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKQWLKDYADIIAVITLPESIFGNAANAKSIFVLKKQAAQTPETFVYPLSDLQSRETLTDFIGKFQKWKVDNMNFKK
NVI
MNFEKIETAYELILENIQLIENELKTHIYDALIEQNSFYLGAEGASEEVAANNEKLRQLALTKEEWRRAFQFIFIKAGQT
EQLQANHQFTPDAIGFILLFLIENLTDSDKIDLLEIGSGTGNLAQTFLNNSSKELNYLGIEVDDLLIDLSASIAEVMDSD
ARFIQEDAVRPQILQESDVIISDLPVGFYPNDDIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKQWLKDYADIIAVITLPESIFGNAANAKSIFVLKKQAAQTPETFVYPLSDLQSRETLTDFIGKFQKWKVDNMNFKK
NVI
Nucleotide
Download Length: 972 bp
>NTDB_id=41053 SGPB_RS00640 WP_003062926.1 98245..99216(+) (comYH) [Streptococcus pasteurianus ATCC 43144]
ATGAATTTTGAAAAAATTGAAACAGCCTATGAGCTGATTTTAGAAAATATCCAATTAATTGAAAATGAGTTAAAAACTCA
TATTTATGATGCGCTTATTGAACAGAACTCTTTTTACTTGGGTGCTGAAGGTGCCAGTGAAGAAGTTGCTGCCAACAATG
AGAAACTGCGTCAGCTTGCATTGACCAAAGAAGAGTGGCGTCGAGCTTTCCAATTTATCTTTATCAAAGCTGGTCAAACA
GAGCAACTGCAAGCCAATCATCAATTTACACCAGATGCTATTGGTTTTATTTTGCTGTTCTTGATTGAAAATCTGACAGA
TTCAGATAAAATTGACCTTTTAGAAATTGGTAGTGGGACAGGGAACCTTGCTCAAACATTCTTAAATAATTCGTCTAAAG
AATTAAATTATCTTGGTATTGAAGTTGACGATTTGTTGATTGATTTATCAGCAAGTATTGCAGAAGTGATGGATTCTGAT
GCTCGGTTTATTCAAGAAGACGCTGTGCGTCCACAAATTCTACAAGAAAGTGATGTGATTATTAGTGATTTGCCAGTGGG
TTTCTATCCTAATGATGACATTGCAAAACGTTATAAAGTGGCAAGTTCTGATGAGCATACCTATGCCCACCATTTGTTAA
TGGAACAATCGTTAAAATATCTCAAAAAAGATGGTATTGCAGTCTTTTTGGCGCCCGTTAGTCTTTTGACAAGCAAACAG
AGTGATTTATTGAAACAATGGTTGAAAGATTACGCGGATATTATCGCCGTGATTACTTTGCCAGAATCTATTTTTGGCAA
TGCAGCGAATGCGAAATCAATTTTTGTTTTGAAAAAACAAGCTGCGCAGACGCCAGAAACCTTTGTTTATCCACTTTCTG
ACTTACAAAGTCGTGAAACTCTGACCGATTTCATTGGAAAATTTCAAAAATGGAAAGTTGATAATATGAATTTTAAAAAA
AATGTGATATAA
ATGAATTTTGAAAAAATTGAAACAGCCTATGAGCTGATTTTAGAAAATATCCAATTAATTGAAAATGAGTTAAAAACTCA
TATTTATGATGCGCTTATTGAACAGAACTCTTTTTACTTGGGTGCTGAAGGTGCCAGTGAAGAAGTTGCTGCCAACAATG
AGAAACTGCGTCAGCTTGCATTGACCAAAGAAGAGTGGCGTCGAGCTTTCCAATTTATCTTTATCAAAGCTGGTCAAACA
GAGCAACTGCAAGCCAATCATCAATTTACACCAGATGCTATTGGTTTTATTTTGCTGTTCTTGATTGAAAATCTGACAGA
TTCAGATAAAATTGACCTTTTAGAAATTGGTAGTGGGACAGGGAACCTTGCTCAAACATTCTTAAATAATTCGTCTAAAG
AATTAAATTATCTTGGTATTGAAGTTGACGATTTGTTGATTGATTTATCAGCAAGTATTGCAGAAGTGATGGATTCTGAT
GCTCGGTTTATTCAAGAAGACGCTGTGCGTCCACAAATTCTACAAGAAAGTGATGTGATTATTAGTGATTTGCCAGTGGG
TTTCTATCCTAATGATGACATTGCAAAACGTTATAAAGTGGCAAGTTCTGATGAGCATACCTATGCCCACCATTTGTTAA
TGGAACAATCGTTAAAATATCTCAAAAAAGATGGTATTGCAGTCTTTTTGGCGCCCGTTAGTCTTTTGACAAGCAAACAG
AGTGATTTATTGAAACAATGGTTGAAAGATTACGCGGATATTATCGCCGTGATTACTTTGCCAGAATCTATTTTTGGCAA
TGCAGCGAATGCGAAATCAATTTTTGTTTTGAAAAAACAAGCTGCGCAGACGCCAGAAACCTTTGTTTATCCACTTTCTG
ACTTACAAAGTCGTGAAACTCTGACCGATTTCATTGGAAAATTTCAAAAATGGAAAGTTGATAATATGAATTTTAAAAAA
AATGTGATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
68.987 |
97.833 |
0.675 |
| comYH | Streptococcus mutans UA159 |
68.671 |
97.833 |
0.672 |