Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GPZ88_RS03600 Genome accession   NZ_CP046919
Coordinates   698672..700645 (-) Length   657 a.a.
NCBI ID   WP_166043430.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 693672..705645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS03580 (GPZ88_03550) amiF 694188..695117 (-) 930 WP_166043428.1 ATP-binding cassette domain-containing protein Regulator
  GPZ88_RS03585 (GPZ88_03555) amiE 695110..696177 (-) 1068 WP_015695757.1 ABC transporter ATP-binding protein Regulator
  GPZ88_RS03590 (GPZ88_03560) amiD 696186..697112 (-) 927 WP_015695758.1 oligopeptide ABC transporter permease OppC Regulator
  GPZ88_RS03595 (GPZ88_03565) amiC 697112..698611 (-) 1500 WP_134775673.1 ABC transporter permease Regulator
  GPZ88_RS03600 (GPZ88_03570) amiA 698672..700645 (-) 1974 WP_166043430.1 peptide ABC transporter substrate-binding protein Regulator
  GPZ88_RS03605 (GPZ88_03575) - 700917..702083 (-) 1167 WP_166043432.1 CynX/NimT family MFS transporter -
  GPZ88_RS03615 (GPZ88_03585) gltX 703719..705176 (-) 1458 WP_074626856.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 73000.68 Da        Isoelectric Point: 4.5287

>NTDB_id=409414 GPZ88_RS03600 WP_166043430.1 698672..700645(-) (amiA) [Streptococcus ruminicola strain CNU_G2]
MNKRGKWILSAGVVLLSASVLTACGNSKTSSSATSTYNYVYNSEPVSLDYIKMNQTGTSNITANLIDGLMENDQYGDLIP
SLAKDWKVSADGLTYTYTIRDDAKWYTADGEEYADVKAEDFITGLKHAADIKSEALYIVQDSIKGLQDYIDGKTKDFSTV
GVKALDDHTIQYTLNAPESYWNSKLTYGIMCPVNADFLKSKGNDFGKQTDPESLLYNGPYLLKSITAKSSMEFEKNPNYW
DADNVHIDDVKLTYFDGSDQDSLFNNFDEGSYTSAALYPSSPSYKTAEKKYSDNIIYAQQDASTFMIYFNLNRTLHNLSD
KTDAQLSDSNKAMNNKDFRQAVTFAFDRGSWNAQTAGEEAKNKALRNSLVPPAFVQVDGKEFGDVVKSDLASYGDEWKDV
DLTDAQDGLYNPDKAKAEFAKAKSALESEGVSFPIQLDFPVAQTDNDSVQRAQSLKQSVESNLGKENVVINLKQVTEDEY
LSATYQAESPEQNDYDLGFSGWSPDYSDPSSYLDIFGTGKTAAMTYRLGISSDNDALIKSTGLDQYQSLLDEANALKDSD
QVDQRYETYAKAQAWLIDSALAIPTVTNGARPQVTRVKPFSGAWSYVGIKGGTYKYLKLQDKPVTAKEYEKARNKWLNNK
EKANEKAAKELAKHVEK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=409414 GPZ88_RS03600 WP_166043430.1 698672..700645(-) (amiA) [Streptococcus ruminicola strain CNU_G2]
ATGAATAAAAGAGGAAAATGGATTTTAAGTGCTGGTGTTGTGCTACTATCTGCATCAGTACTTACAGCTTGTGGTAATAG
TAAAACTTCAAGTTCTGCAACATCAACTTACAACTATGTCTACAATTCTGAACCAGTTTCACTTGATTACATTAAGATGA
ATCAAACTGGTACAAGTAACATTACAGCAAATCTTATTGATGGTTTGATGGAAAATGACCAGTATGGCGACTTGATTCCG
TCACTTGCAAAAGATTGGAAAGTGTCAGCTGATGGTTTGACTTACACTTATACAATTCGTGATGATGCCAAATGGTATAC
TGCTGACGGTGAAGAATATGCAGATGTAAAAGCGGAAGACTTTATTACAGGTCTTAAGCATGCTGCGGATATTAAATCGG
AAGCTCTTTATATTGTGCAAGATTCAATTAAGGGTCTGCAAGATTATATTGATGGCAAGACAAAAGACTTCTCAACAGTC
GGTGTTAAAGCGCTTGATGACCACACTATCCAATATACGCTGAACGCCCCTGAATCATATTGGAATTCTAAATTAACTTA
CGGTATTATGTGTCCAGTAAATGCGGACTTCTTAAAATCAAAAGGTAATGATTTTGGTAAACAAACTGACCCAGAATCAT
TGCTTTATAACGGTCCATACTTACTAAAATCAATTACAGCCAAATCTTCAATGGAATTTGAAAAGAACCCGAATTATTGG
GATGCTGACAACGTCCATATCGATGATGTTAAGTTGACTTATTTTGACGGTTCAGACCAAGATTCACTCTTTAATAATTT
TGATGAAGGTTCATATACAAGTGCAGCCTTGTATCCATCATCTCCAAGCTATAAAACAGCAGAAAAGAAATATAGTGATA
ATATTATTTATGCTCAACAAGATGCTTCAACATTTATGATTTACTTCAATTTAAATCGTACTTTGCATAATTTATCAGAT
AAAACAGATGCGCAATTATCTGATTCTAATAAAGCTATGAACAATAAAGACTTCCGTCAAGCAGTGACATTTGCATTTGA
CCGTGGTTCATGGAATGCTCAAACTGCAGGTGAAGAAGCCAAAAATAAAGCATTGCGCAATAGCTTGGTACCACCAGCAT
TTGTTCAAGTTGATGGTAAAGAATTTGGTGATGTTGTTAAAAGTGACCTAGCATCATATGGTGATGAGTGGAAAGATGTC
GACCTTACAGATGCTCAAGATGGTTTGTATAACCCAGATAAAGCAAAAGCAGAATTTGCTAAAGCCAAATCAGCTCTTGA
ATCAGAAGGCGTCAGCTTCCCAATCCAACTTGATTTCCCAGTTGCTCAAACTGACAACGATTCTGTACAACGTGCACAAT
CATTAAAACAGTCAGTTGAATCTAATCTCGGTAAAGAAAATGTAGTGATTAACCTTAAACAAGTTACAGAAGATGAGTAC
TTATCAGCAACTTATCAAGCAGAAAGTCCTGAGCAAAATGACTATGACCTAGGCTTCTCAGGCTGGTCACCAGACTATTC
TGATCCATCTTCATATCTTGATATCTTTGGTACAGGTAAGACAGCGGCAATGACATATCGTCTTGGTATTTCTTCAGATA
ATGACGCCTTGATTAAATCTACTGGTCTTGATCAATATCAAAGCTTGCTTGATGAAGCAAATGCTCTTAAAGATTCAGAT
CAGGTTGATCAACGTTATGAAACATACGCAAAAGCTCAAGCATGGTTGATAGACAGTGCATTAGCTATTCCAACAGTTAC
TAATGGTGCTCGTCCACAAGTGACAAGAGTAAAACCATTTTCAGGAGCTTGGTCATATGTTGGTATTAAAGGTGGAACTT
ATAAATATCTAAAACTCCAAGATAAACCTGTAACAGCTAAAGAATATGAAAAAGCTCGTAATAAATGGCTTAATAATAAA
GAAAAAGCCAATGAAAAGGCTGCAAAAGAATTAGCTAAACACGTAGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.021

100

0.542
  amiA3 Streptococcus thermophilus LMD-9

52.727

100

0.53
  amiA3 Streptococcus thermophilus LMG 18311

52.576

100

0.528

Multiple sequence alignment