Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GPZ88_RS03580 Genome accession   NZ_CP046919
Coordinates   694188..695117 (-) Length   309 a.a.
NCBI ID   WP_166043428.1    Uniprot ID   A0A6G8HZE1
Organism   Streptococcus ruminicola strain CNU_G2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 689188..700117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS03560 (GPZ88_03530) - 689756..690571 (-) 816 WP_039696185.1 YidC/Oxa1 family membrane protein insertase -
  GPZ88_RS03565 (GPZ88_03535) rnpA 690555..690914 (-) 360 WP_006531772.1 ribonuclease P protein component -
  GPZ88_RS03570 (GPZ88_03540) argH 691055..692449 (-) 1395 WP_166043424.1 argininosuccinate lyase -
  GPZ88_RS03575 (GPZ88_03545) - 692799..693989 (-) 1191 WP_166043426.1 argininosuccinate synthase -
  GPZ88_RS03580 (GPZ88_03550) amiF 694188..695117 (-) 930 WP_166043428.1 ATP-binding cassette domain-containing protein Regulator
  GPZ88_RS03585 (GPZ88_03555) amiE 695110..696177 (-) 1068 WP_015695757.1 ABC transporter ATP-binding protein Regulator
  GPZ88_RS03590 (GPZ88_03560) amiD 696186..697112 (-) 927 WP_015695758.1 oligopeptide ABC transporter permease OppC Regulator
  GPZ88_RS03595 (GPZ88_03565) amiC 697112..698611 (-) 1500 WP_134775673.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35041.09 Da        Isoelectric Point: 6.5977

>NTDB_id=409410 GPZ88_RS03580 WP_166043428.1 694188..695117(-) (amiF) [Streptococcus ruminicola strain CNU_G2]
MTEKLVEVKNLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSNGDILYAGKRINGKKTSA
EHNDLISKIQMIFQDPAASLNERATVDYIISEGLYNFYHFEDDADRKRKVAEMMTEVGLLPEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKRIQREKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTRSLLSAVPIPDPILERQKELIVYDPSQHDYSTDKPEMVEIRPNHFVWANKVELSDYQKRLNK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=409410 GPZ88_RS03580 WP_166043428.1 694188..695117(-) (amiF) [Streptococcus ruminicola strain CNU_G2]
ATGACTGAAAAATTAGTTGAAGTAAAAAATTTGGAAATTTCCTTTGGTGAAGGAAAAAAGAAATTTGTTGCGGTTAAAAA
TGCAAATTTTTTCATCAATAAAGGTGAGACTTTCTCATTAGTTGGTGAATCAGGTTCGGGGAAAACAACCATCGGTCGTG
CTATCATCGGATTGAATGAGACAAGTAATGGCGACATTTTATATGCTGGTAAACGTATTAACGGTAAAAAAACATCTGCT
GAACATAATGATTTGATTTCCAAAATTCAAATGATTTTCCAAGATCCAGCAGCTAGTTTAAATGAGCGAGCAACCGTTGA
TTATATTATTTCGGAGGGCTTATATAATTTTTATCATTTTGAAGATGATGCTGATCGAAAACGTAAAGTAGCAGAGATGA
TGACTGAGGTAGGATTATTGCCAGAGCATTTGACACGTTATCCACATGAATTTTCAGGGGGACAACGTCAGCGTATTGGA
ATTGCGCGTGCTTTGGTCATGGATCCTGAATTTATCATTGCAGATGAACCAATCTCAGCTTTAGATGTCTCAGTGCGTGC
TCAAGTATTAAATCTTTTGAAACGCATCCAGAGGGAAAAAGGCTTAACTTATCTCTTTATCGCACATGATCTGTCTGTAG
TTCGTTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTTGAAGTAGCGGAGACAGAAGAGCTATTTAAT
AACCCAATCCATCCTTATACACGTTCATTACTTTCAGCGGTTCCAATTCCAGATCCTATTCTTGAACGCCAAAAAGAATT
AATTGTGTATGATCCAAGTCAACACGATTACTCAACAGATAAACCTGAGATGGTGGAAATTCGCCCAAATCATTTTGTCT
GGGCAAATAAAGTTGAATTATCTGACTACCAAAAACGACTAAATAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8HZE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

79.935

100

0.799
  amiF Streptococcus thermophilus LMG 18311

79.612

100

0.796
  amiF Streptococcus salivarius strain HSISS4

79.288

100

0.793

Multiple sequence alignment