Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H0272_RS17940 Genome accession   NZ_CP059281
Coordinates   3672567..3673994 (+) Length   475 a.a.
NCBI ID   WP_000980569.1    Uniprot ID   A0A0H3ELL6
Organism   Escherichia coli strain C9     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3667567..3678994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0272_RS25490 (H0272_17910) - 3668360..3668533 (-) 174 WP_032082634.1 transposase domain-containing protein -
  H0272_RS25495 (H0272_17915) - 3668560..3668742 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H0272_RS17920 (H0272_17920) tmaR 3668843..3669172 (-) 330 WP_000450409.1 DUF496 family protein -
  H0272_RS17925 (H0272_17925) yeeA 3669344..3670402 (-) 1059 WP_001200894.1 FUSC family protein -
  H0272_RS17930 (H0272_17930) sbmC 3670600..3671073 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  H0272_RS17935 (H0272_17935) dacD 3671192..3672358 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H0272_RS17940 (H0272_17940) sbcB 3672567..3673994 (+) 1428 WP_000980569.1 exodeoxyribonuclease I Machinery gene
  H0272_RS17945 (H0272_17945) plaP 3674068..3675426 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  H0272_RS17950 (H0272_17950) yoeI 3675416..3675478 (-) 63 WP_010723108.1 membrane protein YoeI -
  H0272_RS17955 (H0272_17955) yeeY 3675693..3676622 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  H0272_RS17960 (H0272_17960) yeeZ 3676668..3677492 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  H0272_RS17965 (H0272_17965) yoeB 3677575..3677829 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  H0272_RS17970 (H0272_17970) yefM 3677826..3678077 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  H0272_RS17975 (H0272_17975) hisL 3678360..3678410 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54499.79 Da        Isoelectric Point: 5.4720

>NTDB_id=409412 H0272_RS17940 WP_000980569.1 3672567..3673994(+) (sbcB) [Escherichia coli strain C9]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=409412 H0272_RS17940 WP_000980569.1 3672567..3673994(+) (sbcB) [Escherichia coli strain C9]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3ELL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment