Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GPZ88_RS03590 Genome accession   NZ_CP046919
Coordinates   696186..697112 (-) Length   308 a.a.
NCBI ID   WP_015695758.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 691186..702112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS03575 (GPZ88_03545) - 692799..693989 (-) 1191 WP_166043426.1 argininosuccinate synthase -
  GPZ88_RS03580 (GPZ88_03550) amiF 694188..695117 (-) 930 WP_166043428.1 ATP-binding cassette domain-containing protein Regulator
  GPZ88_RS03585 (GPZ88_03555) amiE 695110..696177 (-) 1068 WP_015695757.1 ABC transporter ATP-binding protein Regulator
  GPZ88_RS03590 (GPZ88_03560) amiD 696186..697112 (-) 927 WP_015695758.1 oligopeptide ABC transporter permease OppC Regulator
  GPZ88_RS03595 (GPZ88_03565) amiC 697112..698611 (-) 1500 WP_134775673.1 ABC transporter permease Regulator
  GPZ88_RS03600 (GPZ88_03570) amiA 698672..700645 (-) 1974 WP_166043430.1 peptide ABC transporter substrate-binding protein Regulator
  GPZ88_RS03605 (GPZ88_03575) - 700917..702083 (-) 1167 WP_166043432.1 CynX/NimT family MFS transporter -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34751.68 Da        Isoelectric Point: 7.9086

>NTDB_id=409412 GPZ88_RS03590 WP_015695758.1 696186..697112(-) (amiD) [Streptococcus ruminicola strain CNU_G2]
MTNIDKSKFEFVELDSSASEVIDTPTYSYWKSVFRQFFSKKSTIAMLILLIAILLMSFIYPMFSNFDFNDVSDINDFSKR
YVWPNSQYWFGTDKNGQSLFDGVWYGARNSILISVIATIINMVIGLVVGLLWGISKAVDKIMIEIYNVISNLPFILIVMI
LTYSLGSGFWNLILAFCITGWVGIAYSIRVQVMRYRDLEYNLASRTLGTPTIKIATKNLLPQLVSVIVTMVSQMLPSYIS
YEAFLSAFGIGLPVTEPSLGRLISNYSSNLTTNAYLFWIPLATLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=409412 GPZ88_RS03590 WP_015695758.1 696186..697112(-) (amiD) [Streptococcus ruminicola strain CNU_G2]
ATGACTAATATAGACAAAAGTAAATTTGAATTTGTTGAGTTAGATAGTAGTGCCTCTGAAGTTATTGATACACCGACTTA
TTCATATTGGAAATCAGTTTTTAGACAATTCTTTTCTAAAAAGTCGACAATAGCAATGCTTATTTTGCTAATTGCTATTC
TTCTGATGAGTTTTATCTATCCAATGTTTTCAAATTTTGATTTCAATGATGTCAGTGATATTAACGATTTTTCAAAACGC
TATGTTTGGCCAAATAGTCAGTACTGGTTTGGTACGGATAAGAATGGTCAGTCGCTGTTTGATGGTGTTTGGTACGGCGC
TAGAAATTCTATATTGATTTCGGTTATTGCTACTATTATTAATATGGTTATTGGGCTTGTAGTAGGACTACTTTGGGGGA
TTTCTAAAGCAGTCGATAAAATCATGATTGAAATTTATAACGTTATTTCAAATCTTCCATTTATCTTAATCGTTATGATT
TTAACGTATTCTCTAGGTTCAGGATTTTGGAATTTGATTTTGGCATTTTGTATTACAGGTTGGGTTGGTATTGCTTACTC
TATTCGTGTTCAAGTGATGCGTTATCGTGATTTGGAATACAATCTTGCTAGTCGTACTTTAGGAACACCAACTATAAAAA
TTGCGACCAAAAACCTTTTACCCCAATTAGTCTCTGTTATTGTTACTATGGTTTCTCAGATGTTGCCATCATACATTTCA
TATGAAGCCTTCCTATCTGCTTTTGGTATTGGACTTCCAGTCACTGAACCAAGTCTAGGCCGTTTGATTTCAAATTATTC
TTCTAATTTGACAACAAATGCTTATCTTTTCTGGATTCCATTAGCAACGCTCATTTTAGTATCGCTTCCTCTCTATATTG
TTGGGCAAAATCTTGCTGATGCTAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

76.299

100

0.763
  amiD Streptococcus thermophilus LMG 18311

74.675

100

0.747
  amiD Streptococcus thermophilus LMD-9

74.675

100

0.747

Multiple sequence alignment